Lhal014897.1
Basic Information
- Insect
- Lobophora halterata
- Gene Symbol
- -
- Assembly
- GCA_932525835.1
- Location
- CAKOAV010000036.1:3038106-3038606[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5e-15 1e-11 44.5 0.2 1 42 15 57 15 58 0.92
Sequence Information
- Coding Sequence
- ATGGTTCGAAAATACGAAAGATTGAGCGGCCGCCAGGCATGGAGCGAAGAAGATATGGCGAAAGCCGTGGCAGCCGTCGTGTCAGGTAAGATGGGGTACAAGCTGGCAGCGCGGACGTTCCACATTCCGCGCTCCACGCTGCAGCGACGCGCCAGCAAGGTACGCTACCAGATGCCCGACGACGCTACCAAGCCGCTCATGGGCCAGTACCGCCGCGTCTTCACCGTCGATCAGGAGAAAGACCTCGTCGGCTACATCAAGAGCATGGAGAAATACTTCATGGGAGTCTCCAGGCGCGACATCAGAGAGCTCGCCTTCCAGTATGCCGAAGACAATAGCCTCAACCACCCGTTCGATGTGAACAGCAGGATGGCCGGCGAGGACTGGGTCAGGAACTTCCTCAAGCGAAACCCCGAGCTCCTCGACAAGTCTGACAACGAACTGGGACTGGCGCCCGTCAACTTCGACCAGTTCTATCACTTTATGTGCCAGTTCTCATGA
- Protein Sequence
- MVRKYERLSGRQAWSEEDMAKAVAAVVSGKMGYKLAARTFHIPRSTLQRRASKVRYQMPDDATKPLMGQYRRVFTVDQEKDLVGYIKSMEKYFMGVSRRDIRELAFQYAEDNSLNHPFDVNSRMAGEDWVRNFLKRNPELLDKSDNELGLAPVNFDQFYHFMCQFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00786686;
- 90% Identity
- iTF_01170497; iTF_00663009; iTF_00361539; iTF_01182595; iTF_00166854; iTF_00702822; iTF_00810922; iTF_00704879; iTF_00638577; iTF_00250388; iTF_00703861; iTF_01161242; iTF_00699102; iTF_01099775; iTF_01171392; iTF_01529121; iTF_00377027; iTF_00700934; iTF_00267113; iTF_00856523; iTF_01335851; iTF_00119532; iTF_00632684; iTF_00737392; iTF_01528208; iTF_00662161; iTF_00701873; iTF_00686260; iTF_00661205; iTF_00705914; iTF_00697257; iTF_01509513; iTF_01219709; iTF_01428978; iTF_00318036; iTF_00698197; iTF_00696408; iTF_01358808; iTF_00859388; iTF_00321526; iTF_00723898;
- 80% Identity
- -