Basic Information

Insect: Lithophane semibrunnea
Gene Symbol: -
Assembly: GCA_947363905.1
Location: OX376214.1:6618088-6620344[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.029 2.1 9.4 0.1 3 23 91 112 89 112 0.92

2 15 9.4 7e+02 1.5 4.4 1 23 134 156 134 156 0.97

3 15 9.3e-06 0.00069 20.4 0.3 1 23 160 182 160 182 0.98

4 15 0.0042 0.31 12.0 0.5 1 23 187 210 187 210 0.96

5 15 0.0074 0.55 11.2 3.4 1 23 216 239 216 239 0.96

6 15 0.015 1.1 10.3 0.1 1 23 283 305 283 305 0.95

7 15 3.4 2.5e+02 2.9 2.6 2 23 329 351 328 351 0.93

8 15 3.6e-05 0.0027 18.5 3.5 1 23 373 395 373 395 0.99

9 15 0.0017 0.13 13.3 3.3 2 23 400 421 399 421 0.95

10 15 0.0035 0.26 12.3 1.9 1 23 429 452 429 452 0.92

11 15 0.0058 0.43 11.6 0.9 1 23 458 481 458 481 0.97

12 15 0.12 9.2 7.4 1.1 1 23 487 510 487 510 0.96

13 15 3.7e-05 0.0028 18.5 0.8 1 23 516 538 516 538 0.97

14 15 2e-06 0.00015 22.5 0.8 1 23 544 566 544 566 0.99

15 15 8.2e-05 0.0061 17.4 5.2 1 23 572 594 572 595 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.029	2.1	9.4	0.1	3	23	91	112	89	112	0.92
2	15	9.4	7e+02	1.5	4.4	1	23	134	156	134	156	0.97
3	15	9.3e-06	0.00069	20.4	0.3	1	23	160	182	160	182	0.98
4	15	0.0042	0.31	12.0	0.5	1	23	187	210	187	210	0.96
5	15	0.0074	0.55	11.2	3.4	1	23	216	239	216	239	0.96
6	15	0.015	1.1	10.3	0.1	1	23	283	305	283	305	0.95
7	15	3.4	2.5e+02	2.9	2.6	2	23	329	351	328	351	0.93
8	15	3.6e-05	0.0027	18.5	3.5	1	23	373	395	373	395	0.99
9	15	0.0017	0.13	13.3	3.3	2	23	400	421	399	421	0.95
10	15	0.0035	0.26	12.3	1.9	1	23	429	452	429	452	0.92
11	15	0.0058	0.43	11.6	0.9	1	23	458	481	458	481	0.97
12	15	0.12	9.2	7.4	1.1	1	23	487	510	487	510	0.96
13	15	3.7e-05	0.0028	18.5	0.8	1	23	516	538	516	538	0.97
14	15	2e-06	0.00015	22.5	0.8	1	23	544	566	544	566	0.99
15	15	8.2e-05	0.0061	17.4	5.2	1	23	572	594	572	595	0.96

Sequence Information

Coding Sequence: ATGGCTGCAGGAAAGTCAACTACAATAATTTGGAAGAGAAAACGCCGAATAAAAGAAGACGCAGCAAATGCAGCTATTATAATAAAAAACTCGAATGCAGTAGTATTCAGATTGCATAGAGGCAAATTTATGTGCGCTTACTGCCCAAAGATATGTTTAAACGTGCCAGAAATTCGAGAACATTCAGTTATTCATGGGAAACTCGAAATATTCGAGAACCCTGCTGTGAGGAACTCGTTTCCTCTTCGGATCGATATCACAGATTTAGCATGTAGTTTATGCGGCGAAAATGTACAAAATATAGACAATTTGAAGACGCATATAGCAGAGAAGCATTCACAGATGATTAACCCGGATTTTTCGGATGGTGTCATGCCATTTGTTTTAACTGGGAAAGAATACAGATGCGTCCACTGCAGCTTACTATGTGAAGGTTTCATGACTTTATTTACGCACATGAACCAACATTACCAAAGTTTTGTTTGCCCTACATGCGGCAAAGGATTTTCGGGACGCAACAAGCTTCGTAGCCACCTCGTCACCCACGAATTTGGACAATTCAATTGCTCAAAATGCGATTCAGTATTCCCTAATCGTGCTACGAAGAACAGGCATTTGGTCACAGCTCATAGTAGAAAAGATAAATATAGGTGTCCAGTGTGTGATCAACATTTTATTCACTACCGTTCAAGACTGAGGCATTTAGATAAGGCGCATGGGCCAGAAAGGCTCGTCGAACTCAAAGTAAAATGGAGGCCGACACGCAAGTATAACGATCACAGAGATAATGCTGCTATCATTCTCGAAAGTTCCAACGCTTGTCCTTTTAGGTGGAGACGAGGGGCCTTCACTTGCGCGTACTGTCCGCTCTCCTTCGGAGATTTCAGTGGTGTAAAGGATCATACCGTAGTACACCCTAACAGGATCGAAGCCCTGCGTAAGGCGCGACCGTTTGCAAACGTCAAAATGGAAGTTACTGAGCTACGATGCGAATTATGTCTCATGCGAATGACGAGCTTAGATCATCTTTGCGAACATTTACTCCAAAATCATAACAAACCGATAATCAATAAACATGGTATAGGAGTCACGCCTTACTATCTTGTAGGCAAAGAATACAAGTGCACTCATTGTGATGAAACATTTGTTCTTTTCTCTAAATTGAACTCACATTTGAACACGCACTATCCAAATTGCATCTGTTTCCAATGCGGTAAAGCATTCTCGTCCGTGCACAGGCTGAAATCCCATTTACTCATCCACGATTCGGCACCCACAACCCAATTTAAATGCACTAAATGCGACCAAGTTTTCGCCACACGTGTCTTGCGGAATAATCATACAACCCAAAAACACGGCCCGGAATTTAGATACAGGTGTCCTTACTGCAAAGATACTTTTAAAAGCTACGCTGACAGAGGAAGGCATTTGAAAGTGGAACACGACAAAAAAATCGAGTATCCCTGCAATTTGTGTCCATCAATTTTCGCGATGTGTAATCAAAGGACCAAACATATCAAACAAGTTCATATGGGAATTAAATCATTCGCTTGCACTTTTTGCTCGTACAAATTCGTGACAGCTGCTCAGTTGAGGAGCCATATGATAAAACATGGAGGGGAGAGGAAGTATCAATGTGAGGTGTGCAAGAAAGCGTATGCTAGGACCAAAACTTTGAGGGAGCATATGAGGATACATAATAATGATAAGAGATTTGTTTGTCAGTACTGCAATACTGCGTATGTTCAGAAATGTAGTTTGCAAAGTCATTTGAGAACACACCATCCTACAGCAGAGCCTCTAAAAAAGATTAAGATATCTAATCTGTATTAA
Protein Sequence: MAAGKSTTIIWKRKRRIKEDAANAAIIIKNSNAVVFRLHRGKFMCAYCPKICLNVPEIREHSVIHGKLEIFENPAVRNSFPLRIDITDLACSLCGENVQNIDNLKTHIAEKHSQMINPDFSDGVMPFVLTGKEYRCVHCSLLCEGFMTLFTHMNQHYQSFVCPTCGKGFSGRNKLRSHLVTHEFGQFNCSKCDSVFPNRATKNRHLVTAHSRKDKYRCPVCDQHFIHYRSRLRHLDKAHGPERLVELKVKWRPTRKYNDHRDNAAIILESSNACPFRWRRGAFTCAYCPLSFGDFSGVKDHTVVHPNRIEALRKARPFANVKMEVTELRCELCLMRMTSLDHLCEHLLQNHNKPIINKHGIGVTPYYLVGKEYKCTHCDETFVLFSKLNSHLNTHYPNCICFQCGKAFSSVHRLKSHLLIHDSAPTTQFKCTKCDQVFATRVLRNNHTTQKHGPEFRYRCPYCKDTFKSYADRGRHLKVEHDKKIEYPCNLCPSIFAMCNQRTKHIKQVHMGIKSFACTFCSYKFVTAAQLRSHMIKHGGERKYQCEVCKKAYARTKTLREHMRIHNNDKRFVCQYCNTAYVQKCSLQSHLRTHHPTAEPLKKIKISNLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00449499;
90% Identity: iTF_00449499; iTF_00238055; iTF_01247425;
80% Identity: -