Basic Information

Insect: Polymixis flavicincta
Gene Symbol: -
Assembly: GCA_949987655.1
Location: OX465201.1:7575245-7577538[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.011 1.4 10.9 0.1 3 23 103 124 101 124 0.92

2 14 3.3e-05 0.0042 18.9 1.1 1 23 172 194 172 194 0.98

3 14 0.0027 0.34 12.9 0.6 1 23 199 222 199 222 0.96

4 14 0.0041 0.52 12.3 3.0 1 23 228 251 228 251 0.92

5 14 0.087 11 8.1 0.2 1 22 305 326 305 327 0.89

6 14 4.1 5.1e+02 2.8 2.6 2 23 351 373 350 373 0.93

7 14 0.0016 0.21 13.5 3.5 1 23 395 417 395 417 0.99

8 14 0.0015 0.19 13.6 3.5 2 23 422 443 421 443 0.95

9 14 0.011 1.3 11.0 2.9 1 23 451 474 451 474 0.90

10 14 0.0061 0.77 11.7 0.7 1 23 480 503 480 503 0.97

11 14 0.16 21 7.2 1.8 1 23 509 532 509 532 0.96

12 14 1.5e-05 0.0019 19.9 0.4 1 23 538 560 538 560 0.98

13 14 2.4e-06 0.0003 22.5 0.8 1 23 566 588 566 588 0.99

14 14 0.00068 0.086 14.7 3.7 1 23 594 616 594 617 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.011	1.4	10.9	0.1	3	23	103	124	101	124	0.92
2	14	3.3e-05	0.0042	18.9	1.1	1	23	172	194	172	194	0.98
3	14	0.0027	0.34	12.9	0.6	1	23	199	222	199	222	0.96
4	14	0.0041	0.52	12.3	3.0	1	23	228	251	228	251	0.92
5	14	0.087	11	8.1	0.2	1	22	305	326	305	327	0.89
6	14	4.1	5.1e+02	2.8	2.6	2	23	351	373	350	373	0.93
7	14	0.0016	0.21	13.5	3.5	1	23	395	417	395	417	0.99
8	14	0.0015	0.19	13.6	3.5	2	23	422	443	421	443	0.95
9	14	0.011	1.3	11.0	2.9	1	23	451	474	451	474	0.90
10	14	0.0061	0.77	11.7	0.7	1	23	480	503	480	503	0.97
11	14	0.16	21	7.2	1.8	1	23	509	532	509	532	0.96
12	14	1.5e-05	0.0019	19.9	0.4	1	23	538	560	538	560	0.98
13	14	2.4e-06	0.0003	22.5	0.8	1	23	566	588	566	588	0.99
14	14	0.00068	0.086	14.7	3.7	1	23	594	616	594	617	0.95

Sequence Information

Coding Sequence: ATGTTTCTATTTTTAGGGGTgatagaagaaaaagaaatggCAGCAGGAAAGTCCACTAAAATAGTTTGGAAGAGAAAACGCCGAGTTAAAGAAGACGCAGCGAATGCAGCTATTATAATAAAACACTCAAATGCAGTAGTGTTCAGATTGCATAGAGGCAAATTCATGTGCGCTTACTGcccaaaaatatgtttaaacgTATTGGATATTCGGGAACATTCAGTTATTCATAGAAAGCTCGAAATATTCGAGAACCCTGTTGTGAGAAACTCGTTCCCTCTTCGAATCGATATCACAGATTTAGCATGTAGTTTATGCGGTGAGAGCGtacaaaatatagataattTAAAGGCACATTTAACAGAGAAGCATTCAATGATTATTGACCCGGATTTTTCGGATGGAGTCATACCATTCGTTTTAACTGGCAAAGAATATAGATGTGTACATTGCAGCTTGCTATGTGAAGGGTTCTTGACTTTATTCACGCACATGAACCAACATTACCAAAGCTATGTTTGTCCTACTTGCGGCAAAGGATTTTCGGGATGCAACAAGCTTCGAAGCCACCTCGTCACCCACGAATTTGGACAATTCAACTGTCAAAAATGCGATTCAGTATTCCGTAATCGAGCAGCGAAGAACAGACATTTGGTCACAGCTCATGGAAGAAAAGACAGATATAGGTGTCCAGTTTGTGATCAGCATTTTAGTCACTACCGTTCAAGACTGAGGCATCTAGATGAAGCGCATGGGCCAGAAAGATTGAAAGATGGCATAGATTTCGTTGTTCggCCTGTCGACCTCAAAGTAAAATGGATGCCAACACGGAAGTATAACGATCACAGAGATAATGCCGGTATCATTCTCGAAAGTTCCAACGCTTGCCCGTTTAGGTGGAGACGAGGGGCCTTCACTTGCGCGTACTGCCCGCTCTCTTTCGGAGATTTCAGTGGTGTCAAGGACCATTCCGTACAACACCCCAACAAGATCGAAGCCCTCCGCAAGGCAAAACCGTTTGCAAACGTCAAAATGGAAGTCACTGAGCTACGATGCGAATTATGTCTCATGCGAATGACGAGCTTAGATCATCTTTGCGAACATTTACTccaaaatcataacaaaccAATCATCAATAAACATGGTATAGGAGTTACACCTTACTATCTGTCAGGGAAAGAATATAAGTGCACACATTGTGATGATACGTTTGTTCTGTTCTCCAAATTGAACTCACATTTAAACACGCACTATCCAAACTGCATCTGTTTTCAATGCGGTAAAGCATTCTCGACCGTGCACAGGTTGAAATCTCATTTGCTCATACACGATTCGGCAACCATAGCACAATTTAAATGCTCTAAATGCGACCAAGTCTTCACCACACGTGTCTTAAGGAATTATCATACGACCCAAAAACACGGCCCAGAACGCAGATATAGGTGTCCCTACTGCAAAGATACTTTTAAAAGCTACGCTGACAGAGGAAGGCATCTGAAAGTGGCGCACGACAAATCAATCGAGTACCCTTGCAATTTGTGTTCATCAGTTTTCGCCATGTGTAATCAAAGGACGAAACATATAAAACAAGTACATATGGCAATTAAGGAATTTGAGTGCACATCTTGCCCGTACAAATTTGTGACAGCTGCTCAGTTAAGGAGTCATATGATTAAACATGGAGGGGAGAGGAAGTATCAATGTGAGGTGTGTAAGAAAGCATACGCTAGGACCAAAACTTTGCGAGAGCATATGAGGATACATAATAATGATAAGAGATTTGCTTGCCAGTTCTGTGATGTTGCGTATGTTCAGAAATGTAGTTTGCAAAGTCATTTGAGAACGCACCATTCTACACGACCTTGA
Protein Sequence: MFLFLGVIEEKEMAAGKSTKIVWKRKRRVKEDAANAAIIIKHSNAVVFRLHRGKFMCAYCPKICLNVLDIREHSVIHRKLEIFENPVVRNSFPLRIDITDLACSLCGESVQNIDNLKAHLTEKHSMIIDPDFSDGVIPFVLTGKEYRCVHCSLLCEGFLTLFTHMNQHYQSYVCPTCGKGFSGCNKLRSHLVTHEFGQFNCQKCDSVFRNRAAKNRHLVTAHGRKDRYRCPVCDQHFSHYRSRLRHLDEAHGPERLKDGIDFVVRPVDLKVKWMPTRKYNDHRDNAGIILESSNACPFRWRRGAFTCAYCPLSFGDFSGVKDHSVQHPNKIEALRKAKPFANVKMEVTELRCELCLMRMTSLDHLCEHLLQNHNKPIINKHGIGVTPYYLSGKEYKCTHCDDTFVLFSKLNSHLNTHYPNCICFQCGKAFSTVHRLKSHLLIHDSATIAQFKCSKCDQVFTTRVLRNYHTTQKHGPERRYRCPYCKDTFKSYADRGRHLKVAHDKSIEYPCNLCSSVFAMCNQRTKHIKQVHMAIKEFECTSCPYKFVTAAQLRSHMIKHGGERKYQCEVCKKAYARTKTLREHMRIHNNDKRFACQFCDVAYVQKCSLQSHLRTHHSTRP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00449499;
90% Identity: iTF_00908182;
80% Identity: -