Doo019075.1
Basic Information
- Insect
- Dicycla oo
- Gene Symbol
- -
- Assembly
- GCA_948252095.1
- Location
- OX411734.1:8854537-8857781[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0077 0.94 11.1 0.6 1 23 60 83 60 83 0.90 2 17 0.00053 0.064 14.8 0.5 1 23 90 113 90 113 0.97 3 17 0.72 88 4.9 0.2 1 16 120 135 120 137 0.90 4 17 0.12 15 7.3 0.1 3 23 218 239 216 239 0.92 5 17 1.5e-05 0.0018 19.7 0.3 1 23 287 309 287 309 0.98 6 17 0.005 0.61 11.7 0.2 1 23 314 337 314 337 0.96 7 17 0.0039 0.48 12.1 4.1 1 23 343 366 343 366 0.96 8 17 0.0076 0.93 11.1 0.1 1 23 410 432 410 432 0.97 9 17 4 4.9e+02 2.6 2.6 2 23 456 478 455 478 0.93 10 17 4.3e-05 0.0052 18.2 3.5 1 23 500 522 500 522 0.99 11 17 0.0011 0.13 13.8 1.6 2 23 527 548 526 548 0.95 12 17 0.014 1.7 10.3 2.0 2 23 557 579 556 579 0.92 13 17 0.014 1.7 10.3 0.7 1 23 585 608 585 608 0.97 14 17 0.042 5.1 8.8 0.7 1 23 614 637 614 637 0.96 15 17 3e-05 0.0037 18.7 0.8 1 23 643 665 643 665 0.97 16 17 2.3e-06 0.00029 22.2 0.8 1 23 671 693 671 693 0.99 17 17 9.7e-05 0.012 17.1 5.2 1 23 699 721 699 722 0.96
Sequence Information
- Coding Sequence
- ATGCGAAGGCGACGACGCGCCAACAACCAGCTCCCCGAAGAATCGGAGAAAAGGATATCCAAAACCATGATGCGTCGAAACGCATTGATCCTTTTAGAATGTTCGACAGCCTGGGCGTTTCGATGGTTCCATAGCGCATTTTACTGCTCATACTGCGATGCTAAAAAAGGCGTTCGCTACGCTTGCCCGAGATGCCCCGAAGTTTTTACAACTTACCACACGAGAGCAAAACATTTGGTAGAAACCCACGCCCAACAGAGAAAAGAATACTACTGTAATGCTTGCGACAAATCTTTTGAAACCAGCTCCAAAAGAGCAGGACATATACGTGTAACTCACGCGAACGTTGAGAAACGACACTTCTGCCCAAACTGTCCTTCGATATTTGTTAGCAAATCGAAGTTGCTGCTTTGGAAGAGAAAACGCCGAATTAAAGAAGACGCAGCAAATGCAGCTATTATAATAAAACACTCAAATGCAGTAGTATTCAGATTACATAGAGGCAAATTCATGTGTGCTTACTGCCCGAAGATTTGTTTAAACGTACCGGAAATTCGAGAACATTCAGTTATTCATGGGAAGCTCGAAATATTCGAGAACCCTGCTGTGAGAAACTCGTTTCCTCTTCGGATCGATATCACAGATTTAGCATGTAATTTATGCGGCGAAAATGTACAAAATATAGACAAGTTAAAGACACATATAGCAGAGAAGCATTCGAAGAGGATTGACCCGGATTTTTCGGATGGTGTCATACCATTCGTTTTAACTGGCAAAGAATATAGATGCGTCCACTGCAACTTTCTATGTGAAGGATTCATGACTTTATTCATGCACATGAACCAACATTACCAAAGCTATATTTGCCCTACATGCGGCAAAGGATTTTCGGGACGCAACAAGCTTCGTAGCCACCTCGTCACCCACGAATTTGGACAATTCAATTGCTCAAAATGTGATTCAGTATTCCCTAATCGTGCTGCGAAGAACAGGCATTTGGTCACAGCTCATGGCAGAAAAGATAGATATAGGTGTCCAGTTTGTGATCAACATTTTAGTCACTACCGTTCAAGACTGAGGCATTTAGATAAGGCGCATGGGCCAGAAAGGCCCGTCGAACTCAAAGTAAAATGGAGGCCAACACGCAAGTATAACGATCACAGAGATAATGCCGCTATCATTCTCGAAAGTTCAAACGGTTGTCCTTTTAGGTGGAGACGAGGGGCCTTCACTTGCGCGTACTGTCCGCTCTCCTTCGGAGATTTCAGTGGTGTAAAGGACCATACCTCAGTACACCCTAACAGGATTGAAGCCCTCCGCAAGGCGCGACCATTTGCAAATGTCAAAATGGAAGTTACTGAGCTACGATGCGAATTATGTCTCATGCGAATGACGAGTTTAGATCATCTTTGCGAACATTTACTCCAAAATCATAACAAACCAATAATAAATAAACATGGCTTAGGAGTCACACCTTACTATCTAGCAGAGAAAGAATACAAGTGCACTCATTGTGATGAAACATTTGTTCTTTTCTCTAAATTAAACTCACATTTGAACACGCACTATCCAAATTGCATCTGTTTTCAATGCGGTAAAGCATTCTCTTCCGTAAACAGGCTGAAATCCCACTTACTCATCCATGATTCGGCACCTACAGCACAATGTAAATGTACTAAATGCGAACAAGTTTTCGCCACACGCGCCTTAAGGAACAATCATATAGCCCAAAAACACGGCCCAGAATTTAGATACAGGTGTCCTTACTGCAAAGATACTTTCAAAAGCTACCCTGACAGAGGAAGGCATTTGAAAGTGGCGCACGACAAAAAAGTCGAGTATCCCTGCAATCTGTGTCCAGCAATTTTCGCGATGTGTAATCAAAGGACCAAACATATAAAACAAGTTCATATTGGAATTAAGTCATTCGCGTGCACTTTTTGCTCGTACAAATTCGTGACAGCTGCTCAGTTGAGGAATCATATGATTAAACATGGAGGGGAGAGGAAGTATCAATGTGAGGTGTGTAAGAAAGCGTATGCTAGGACCAAAACTTTGCGGGAGCATATGAGGATACATAATAATGATAAGAGATTTGTTTGTCAGTACTGTAATACTGCCTATGTTCAGAAATGTAGTTTGCAAAGTCATTTGAGAACGCACCATCCTGCAGCAGAACCTTTAAAAAAAGATTAA
- Protein Sequence
- MRRRRRANNQLPEESEKRISKTMMRRNALILLECSTAWAFRWFHSAFYCSYCDAKKGVRYACPRCPEVFTTYHTRAKHLVETHAQQRKEYYCNACDKSFETSSKRAGHIRVTHANVEKRHFCPNCPSIFVSKSKLLLWKRKRRIKEDAANAAIIIKHSNAVVFRLHRGKFMCAYCPKICLNVPEIREHSVIHGKLEIFENPAVRNSFPLRIDITDLACNLCGENVQNIDKLKTHIAEKHSKRIDPDFSDGVIPFVLTGKEYRCVHCNFLCEGFMTLFMHMNQHYQSYICPTCGKGFSGRNKLRSHLVTHEFGQFNCSKCDSVFPNRAAKNRHLVTAHGRKDRYRCPVCDQHFSHYRSRLRHLDKAHGPERPVELKVKWRPTRKYNDHRDNAAIILESSNGCPFRWRRGAFTCAYCPLSFGDFSGVKDHTSVHPNRIEALRKARPFANVKMEVTELRCELCLMRMTSLDHLCEHLLQNHNKPIINKHGLGVTPYYLAEKEYKCTHCDETFVLFSKLNSHLNTHYPNCICFQCGKAFSSVNRLKSHLLIHDSAPTAQCKCTKCEQVFATRALRNNHIAQKHGPEFRYRCPYCKDTFKSYPDRGRHLKVAHDKKVEYPCNLCPAIFAMCNQRTKHIKQVHIGIKSFACTFCSYKFVTAAQLRNHMIKHGGERKYQCEVCKKAYARTKTLREHMRIHNNDKRFVCQYCNTAYVQKCSLQSHLRTHHPAAEPLKKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01247425; iTF_00908182; iTF_00238055;
- 90% Identity
- iTF_00908182;
- 80% Identity
- -