Basic Information

Insect: Brachylomia viminalis
Gene Symbol: -
Assembly: GCA_937001565.2
Location: CAKZJP020000528.1:600731-603032[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 5.6 7.9e+02 2.4 0.4 1 19 53 71 53 75 0.74

2 16 0.026 3.7 9.7 0.1 3 23 101 122 99 122 0.92

3 16 0.31 44 6.4 2.5 1 23 144 166 144 166 0.98

4 16 3.3e-05 0.0046 18.9 1.1 1 23 172 194 172 194 0.98

5 16 0.048 6.9 8.9 0.3 1 23 199 222 199 222 0.95

6 16 0.0039 0.56 12.3 4.1 1 23 228 251 228 251 0.96

7 16 0.0076 1.1 11.4 0.1 1 23 295 317 295 317 0.97

8 16 4 5.7e+02 2.9 2.6 2 23 341 363 340 363 0.93

9 16 0.0041 0.58 12.3 3.9 1 23 385 407 385 407 0.99

10 16 0.0015 0.22 13.6 3.5 2 23 412 433 411 433 0.95

11 16 0.012 1.7 10.8 1.9 1 23 441 464 441 464 0.92

12 16 0.0061 0.86 11.7 0.7 1 23 470 493 470 493 0.97

13 16 0.015 2.1 10.5 0.7 1 23 499 522 499 522 0.96

14 16 4.4e-05 0.0062 18.5 0.8 1 23 528 550 528 550 0.97

15 16 2.4e-06 0.00033 22.5 0.8 1 23 556 578 556 578 0.99

16 16 0.00014 0.02 16.9 4.1 1 23 584 606 584 607 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	5.6	7.9e+02	2.4	0.4	1	19	53	71	53	75	0.74
2	16	0.026	3.7	9.7	0.1	3	23	101	122	99	122	0.92
3	16	0.31	44	6.4	2.5	1	23	144	166	144	166	0.98
4	16	3.3e-05	0.0046	18.9	1.1	1	23	172	194	172	194	0.98
5	16	0.048	6.9	8.9	0.3	1	23	199	222	199	222	0.95
6	16	0.0039	0.56	12.3	4.1	1	23	228	251	228	251	0.96
7	16	0.0076	1.1	11.4	0.1	1	23	295	317	295	317	0.97
8	16	4	5.7e+02	2.9	2.6	2	23	341	363	340	363	0.93
9	16	0.0041	0.58	12.3	3.9	1	23	385	407	385	407	0.99
10	16	0.0015	0.22	13.6	3.5	2	23	412	433	411	433	0.95
11	16	0.012	1.7	10.8	1.9	1	23	441	464	441	464	0.92
12	16	0.0061	0.86	11.7	0.7	1	23	470	493	470	493	0.97
13	16	0.015	2.1	10.5	0.7	1	23	499	522	499	522	0.96
14	16	4.4e-05	0.0062	18.5	0.8	1	23	528	550	528	550	0.97
15	16	2.4e-06	0.00033	22.5	0.8	1	23	556	578	556	578	0.99
16	16	0.00014	0.02	16.9	4.1	1	23	584	606	584	607	0.96

Sequence Information

Coding Sequence: ATGTTTCTATTTTTAGGGGCGatagaagaaaaagaaatggCAGCAGGAAAGTCCATAGTTTGGAAGAGAAAACGCCGAACTAAAGAAGACGCAGCAAATGCagctattataataaaacactCGAATGCAGTAGTATTCAGATTACATAGAGGCAAATTCATGTGCGCTTACTGcccaaaaatatgtttaaacgTATCGGAAATTCGAGAACATTCAGTTATTCATGGGAAGCTCGAAATATTCGAGAACCCTGCTGTGAGAAACTCGTTCCCTCTTCGAATCGATATCACAGATTTAGCATGTAGTTCATGCGGCGAAAGTGTACAAAATATAGATAATTTAAAGGCACACTTAGAAGAGAAGCATTCAAAGATTATTGACCCGGATTTTTCGGATGGTGTCGTACCATTCGTTTTAACAGGCAAAGAATACAGATGTGTCCATTGCAGCTTACTATTTGAAGGGTTCATGACTTTATTCACGCACATGAACCAACATTACCAAAGCTACGAGTATGTTTGCCCTACATGCGGCAAAGGATTTTCGGGATGCAACAAGCTTCGTAGCCACCTCGTCACCCACGACTTTGGACAATTCAATTGCCAAAAATGCGATTCAGTATTCCCTAATCGTGCAGTGAAGAACAGGCATTTGGTCACAGCTCATGGCAGAAAAGATAGGTATAGGTGTCCAGTTTGTGATCAACATTTTAGTCACTATCGTTCAAGACTGAGGCATTTAGATAAGGCACATGGGGCAGAAAggcCCGTCGAACTCAAAGTAAAATGGAGGCCGACACGCAAGTATAACGATCACAGAGATAATGCCGCTATCATTCTTGAAAGTTCCAACGCTTGTCCTTTTAGGTGGAGACGAGGGGCCTTCACTTGCGCGTACTGCCCGCTCTCCTTCGGAGATTTCAGTGGAGTAAAGGACCATACCATAGTACACCCTAACAAGATCGAAGCCCTCCGCAAGGCGCGACCGTTTGCAAACGTCAAATTGGAAGTGACAGAGCTACGGTGCGAATTATGTCTCATGCGAATGACGAGCTTAGATCATCTTTGCGAACATTTACTCCAAAATCATAACAAACCAATCGTCAATAAACATGGTATAGGAGTTACGCCTTACTATCTGGTAGGGAAAGAATACAAGTGCACTCATTGTGATGATACATTTGTTCTTTTCTCTAAATTGAACTCGCATTTGAACAAGCATTATCCAAATTGCATCTGTTTTCAATGCGGTAAAGCATTCTCGACCGTGCACAGGTTGAAATCTCATTTACTTATCCACGATTCGGCACCCGCAGCCCAATTTAAATGCACTAAATGCGACCAAATTTTCGCTACACGTGTCTTGAGAAATAATCATACAACCCAAAAACACGGCCCAGAATTCAGATACAGGTGCCCTTACTGCAAAGATACTTTCAAAAGCTACGCTGATAGAGGAAGGCATTTGAAAGTAGCGCACGACAAAAAAATCGAGTACCCCTGCAATTTATGTCCAGCAGTTTTCGCGATGTGTAATCAAAGGACCAAGCATATAAAACAAGTTCATATGGGAATAAAGTCATTCGCGTGCACTTTCTGCTCGTACAAATTCGTGACAGCTGCTCAGTTGAGGAGTCATATGATTAAACATGGAGGGGAGAGGAAATATCAATGTGAGGTGTGCAAAAAAGCGTATGCTAGGACCAAAACTTTGCGGGAGCATATGAGGATACATAACAACGATAAGAGATTTGTTTGTCAGTACTGTAATGCTGCGTATGTTCAGAAATGTAGTTTGCAAAGTCATTTGAGAACGCACCATCCTACACGCCTTTGA
Protein Sequence: MFLFLGAIEEKEMAAGKSIVWKRKRRTKEDAANAAIIIKHSNAVVFRLHRGKFMCAYCPKICLNVSEIREHSVIHGKLEIFENPAVRNSFPLRIDITDLACSSCGESVQNIDNLKAHLEEKHSKIIDPDFSDGVVPFVLTGKEYRCVHCSLLFEGFMTLFTHMNQHYQSYEYVCPTCGKGFSGCNKLRSHLVTHDFGQFNCQKCDSVFPNRAVKNRHLVTAHGRKDRYRCPVCDQHFSHYRSRLRHLDKAHGAERPVELKVKWRPTRKYNDHRDNAAIILESSNACPFRWRRGAFTCAYCPLSFGDFSGVKDHTIVHPNKIEALRKARPFANVKLEVTELRCELCLMRMTSLDHLCEHLLQNHNKPIVNKHGIGVTPYYLVGKEYKCTHCDDTFVLFSKLNSHLNKHYPNCICFQCGKAFSTVHRLKSHLLIHDSAPAAQFKCTKCDQIFATRVLRNNHTTQKHGPEFRYRCPYCKDTFKSYADRGRHLKVAHDKKIEYPCNLCPAVFAMCNQRTKHIKQVHMGIKSFACTFCSYKFVTAAQLRSHMIKHGGERKYQCEVCKKAYARTKTLREHMRIHNNDKRFVCQYCNAAYVQKCSLQSHLRTHHPTRL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00449499;
90% Identity: iTF_00908182;
80% Identity: -