Lsem007455.1
Basic Information
- Insect
- Lithophane semibrunnea
- Gene Symbol
- PAXBP1
- Assembly
- GCA_947363905.1
- Location
- OX376188.1:16355664-16394383[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.65 8.1e+03 -3.4 0.0 217 238 315 336 307 348 0.72 2 2 1.6e-14 2.1e-10 41.2 0.0 5 190 517 682 514 691 0.74
Sequence Information
- Coding Sequence
- ATGTCGTTGTTTCGAAAGCCGAAGAAGTTTCAGCGTCGGGTTTTCTGTGCTGATGATGACGAGGATGGGGGGGAGCCCGAGGCTCCACCGCCGCCAGTCATCAGCCAAGAAAAGGAGAAAAAGGCTTCAAAGAAAACTGCTCTGTTGAGTTTTGCTGACGAAGAAGAAGAAGAGGAAGTTTTCAAAGTCAAGAAGTCTTCTCAAAGTAAGAGATTAGCGAAGAAGCGTGAGAAAGAGAAGCAGAAGCGCGATGTGAGAACGGATGGTGATAATAACAAATATGACACTATCATTATTGAGGACAATGAAACTGAGCTCAACAACGACAAACCCAAGCCAAAGAAGAAGGTGACATTAGAGGGGCTGATTCTGTCCGGTCGGGAGGCGCTGGCAGCCGACGGGGCGGGTGACGTGTCCGACGACAGTGCGCCCGAGGAGGGTGACGCTGATGAGGACGACAGGGGGTTCCATCGGTACCGCGCCGACTCCGTGAGGGCGGCGCTCTTGGGCGCGCCAGGCCGCATTCCCGACGCCGCCCTCATACACGCCGCACGCAAGACCAGACAGCAGGCTCGCGAGCTGGGTGGAGTCACCGCCGGTGCCGACTACATTCCTGTGAAGGCCGAGTCCGCACCAGGATCCCGGTTAGTGCGGGATGACGGATCCGGCGACGATGAAGAGGAAGGCCGCATTCTTGTCAGGGGACTGGACTTGCCCAGTGATAAGCCTAAACGTGGCACAGCAGCAGCTTCGGAAGAAGAGCTGGACAGTGAGGCGGAGGAATGGGTGGAACAACAGCTGCAGAAGGCACGACCCGTCCTCATGGATCTGACTGGTGAAGCAGCAGTAGAAGTGAATCCGTTCTCGGTAGCCTTGCCGCCGCCTCAGATGTCTGCACCCGAACACTTGCGACCTCTCACGACGGGCTCACAATCACCCACGTCTGCCAACGAACTGGTGGAGGCGCTCAGGAAACGGTTAGAAGAGCTTCAAGTAGAACGTGAGTCGACATCAGAAACACAAAAAGATCTTCGCGAGAGGTTGCTCACTTCGGCTAGAATACGAGAAAGTCGAGCCTCGCGTTGTGCGGAACTAGATGCTGCGTATAGAAGGGCACAGGCTATACGCGGTTATCTGACAGACCTAATCGAGTGCCTTGATGAGAAAATGCCACAACTGGAGGCTTTGGAAGCTCGAGCGCTGGCGTTACATAAGCGTCGCTGTGAGTTCCTCGTAGAAAGGCGACGAGCCGACCTGAGGGATCAAGCGCAAGATGTACTCGCACCACCTGGTCGAGCGTCAAAGCCCGCCGATAACGAAGAGAAGACGCGTCGCGCGGCCGAGCGCGAGGGGAGGCGGCGCGCGCGCAGGCTGCGGCGCGAGGCCGCGCCCGGCGCCGGCGCCGCGCACCGCGACGGCGACTCGTCCGACGACGACCTGCCGCCCAGCGAGCTGCACCACTACACGCAGGAGAGAGACGCAATCCGTCAGCAGTCGGCATCGTTGTTCAGCGACGCCCTGCCGGCGTGGCGCAGCGCGTGCGGCGTGTGCGCGCGCCTGGCGCGCTGGCGGGCGCGCGCCGCGTCGCTGTACACGGACGCGTATGTCGCCGACTGCCTGCCCAAGCTACTGGCGCCCTATGTCAGGCATGAGCTGATTTTATGGAACCCGCTGGCAGATGAAGACAATGAAGACTACGAGAAAATGGATTGGTACAAATGTCTGATGATGTACGGTGTCCGTACTGAACGTGGTGCTGACGACTCCTCAGAATCTGCGTCAGAAGGCGAAGTAGAGCCTCTTCCTGTGACGGACAGTACTGTGCGAGAAGACCCGGACTTGCTGCTGGTGCCCAGCATCATCAGTAGGGTGGTGCTGCCTTGTCTGACAGAGCTAGTGTCAGTAGCGTGGGACCCAGTGAGCGTGCGGTCGTGCATACGTCTGCGTTCACTACTAGTGCGGGCCGCGGGGCTGCCCACATGTTCCAATGCGTTACGTCGCCTGTCGGCCGCGTTACGAGCAAGGTTGGCTGTGGCCCTTGGAGCTGATGTGTTCCTGCCTGCGTTGCCGCCACACGTGCTGGAGGGCGCGGGCGGCGCGTTCTGGCGCCGCTGCCTGGGCGCCGGCGTGCGCCTGCTGCGCGCCGCGCTCGCGCTCACCGGCCCTCCCGCTCTGCTGCATGCGGACCCGCTCGTGTTGTCACTTATCGAGACGTTATGCTGCGGCGCGGGCGCGGCCGGCGGCCCGCACATCGCTCGCGCGGCGGCGGCGCTGGCGGGCACGCTGCCGCGCGGCGGCGCGCTCCGCAGGCGAGCGCTCGCGCGGCTGGCTGCGCTCGCTACTTTAGCACTGTCGAGGCTTGATAGTGACAACCCGCTGCATCTAAAAGCCCTGGAACAAGCAAGAGCAGTGATCGCAGAAGCTCGAGCTGTTGAATGA
- Protein Sequence
- MSLFRKPKKFQRRVFCADDDEDGGEPEAPPPPVISQEKEKKASKKTALLSFADEEEEEEVFKVKKSSQSKRLAKKREKEKQKRDVRTDGDNNKYDTIIIEDNETELNNDKPKPKKKVTLEGLILSGREALAADGAGDVSDDSAPEEGDADEDDRGFHRYRADSVRAALLGAPGRIPDAALIHAARKTRQQARELGGVTAGADYIPVKAESAPGSRLVRDDGSGDDEEEGRILVRGLDLPSDKPKRGTAAASEEELDSEAEEWVEQQLQKARPVLMDLTGEAAVEVNPFSVALPPPQMSAPEHLRPLTTGSQSPTSANELVEALRKRLEELQVERESTSETQKDLRERLLTSARIRESRASRCAELDAAYRRAQAIRGYLTDLIECLDEKMPQLEALEARALALHKRRCEFLVERRRADLRDQAQDVLAPPGRASKPADNEEKTRRAAEREGRRRARRLRREAAPGAGAAHRDGDSSDDDLPPSELHHYTQERDAIRQQSASLFSDALPAWRSACGVCARLARWRARAASLYTDAYVADCLPKLLAPYVRHELILWNPLADEDNEDYEKMDWYKCLMMYGVRTERGADDSSESASEGEVEPLPVTDSTVREDPDLLLVPSIISRVVLPCLTELVSVAWDPVSVRSCIRLRSLLVRAAGLPTCSNALRRLSAALRARLAVALGADVFLPALPPHVLEGAGGAFWRRCLGAGVRLLRAALALTGPPALLHADPLVLSLIETLCCGAGAAGGPHIARAAAALAGTLPRGGALRRRALARLAALATLALSRLDSDNPLHLKALEQARAVIAEARAVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094058;
- 90% Identity
- iTF_00726380;
- 80% Identity
- -