Lvul028536.2
Basic Information
- Insect
- Linnaemya vulpina
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963675445.1
- Location
- OY776280.1:4365270-4373967[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.75 1.6e+04 -4.0 0.4 236 268 23 55 15 71 0.47 2 4 2 4.4e+04 -7.9 15.6 127 284 100 251 91 264 0.69 3 4 3.1e-116 6.7e-112 374.9 26.2 1 299 319 615 319 616 0.94 4 4 0.13 2.9e+03 -1.5 3.7 220 245 644 669 619 690 0.47
Sequence Information
- Coding Sequence
- ATGGATACTTCAAGTGCCGTAGGTCGGCGTCGTGTGAATTCTCGTGTCAATGCTGAAGATCAAGCTTTGGATCAAATTGCAAAagagcatgCGAACATTACTAATGTCAACAACAAAAGTATAaataacaatagcaacaacagcaacattagTAACAGCAGCAACTGCGGCAACAACAATATTGAAGTGGCAAATGATGAAATCATCGAGGAGTTGTTTGATTTTAGCGATACCGATTTAAAAGAACTTGACGTTATAAatgacgaagaagaaattaaaaataacaagaaaaccTCTACAGCCAATAGTTCCGAGCTCTTAACTGAAAGCAACCACAAACTAATAGAAAATGAGAAAGAACTTGATAAAGATTCTGAACAGCCATCGAAAAATGTGACAACTGCTAATATCAATAATCACAATAATGAACtagaacaacaagaacaacaacacgTAGAACTAGTATTGTTATCATCGCCAATTGATAGCATTGATAAGCAAAACGAAGACATTCCAAAAGACAGCGAATGTGTCACGACTAAACCAGCAACAATAAGCAAAATTATTAGCACTGAAGAAAATATAGACAAGGAAATTCATAACAACCAGCATGAAATAGAAACAGTCAAGTCTGAAGAAagcaaagaaattaataaagaatCTGGTAACACAACCGTACACATCTCCAATAGTTCTATTGCTACCGAACGTTCCTTTACTTCTGAGGTTGACAACAATGCCAATAAAACGGCGACATCTTCAGACATAAATTCTGTGAAAACAAATAATACCACGGAGTCGTCGCCTTTGACTGGAATTAAAGATGGCAGTTACGACGACCAAAATGATAACAATGACACTTACAATAATAATgaagaagatgatgatgatggtgactACACTGAGCCATATGATGAACTTTTAGTGCAGTTCCTTGATGAATCCAATCAGATTGCTGAGGCAAGATTAGCTGCTAGAAGGCATGCCAGAGCGGAAGCTCGGGAAATACGTATGCGTGAATTGGAACGCCAACAAAAGGAGCAAGAATCTAACGCAGATCGTGTTTTCGATATGCACTCAACAGTAACTGGAATTACACCATTGTCACACATGCGTCTTGGGTTGGGAAGCACACCAGTAACAGGTTTACTAAATTCCACAAGAGGCAACTCTATGTCTTCGCGACGCAGCAGTGAAGATTCGCTAGAAGAGGAAGGCCGCAGTTTAAGGGACATACGACATGAATTAAAAgATGTCGAAGAACGGTTTCGCAAGGCTATGATAGCGAATGCTCAGTTGGATAATGATCGTGCCTCTCAAACGTATCAAATACAGTTGTTAAAAGACAAACTGGAAGATATGGAAGAATCATATTCACAATTACAGCGTGAATGTAAAGAAAAGACACGCGATTGTAATGCCTTAAAACGATCGCTGGATAAACTAAGCGAAGAGCTTAAACTAGTACAGGGTCAGCTAAATGAGCGTGACACCCTGATAGCGGAACAAGGTTTAGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTAGGTTCGGTACAAGGATCTTTAGatgtCCGACTTAAAAAATTCAGCGAAGAGAAACATCAGCTGCAGGCTGAAGTTCAACAGTTGCAGGAACAATTAGATTCGTATAAAAGTCAGGGCAAAGGTCGAGGTAAAGGCAGTTCGTCTAACGGTCCCATAGCTTCAGACGATGATGACTATGAAGCTCaaaGAGAAGCTAACAAAATCATAATGGACTATAAGTATAAGTTACAAAAAGCTGAACAGGAAATCGCTAGTCTTCAATCTAGTTTAGCACGCTCTGAAACTCAAGTTATACGCTATAAAAGTACTGCTGAAGCTGCCGAAAAAGCGGAAGCCGAACTTAAAATCGAAAGGAGAAAACTGCAAAGAGAGaatCGGGAAGCAATGGAAAAGCTTGAAGAGTTAGAAACATCAAATAATCATCTTCTTAAACGTTTGGACAAGCTAAAGAATGCCAAAAGTGCTTTGCTAAAGGATCTCTGA
- Protein Sequence
- MDTSSAVGRRRVNSRVNAEDQALDQIAKEHANITNVNNKSINNNSNNSNISNSSNCGNNNIEVANDEIIEELFDFSDTDLKELDVINDEEEIKNNKKTSTANSSELLTESNHKLIENEKELDKDSEQPSKNVTTANINNHNNELEQQEQQHVELVLLSSPIDSIDKQNEDIPKDSECVTTKPATISKIISTEENIDKEIHNNQHEIETVKSEESKEINKESGNTTVHISNSSIATERSFTSEVDNNANKTATSSDINSVKTNNTTESSPLTGIKDGSYDDQNDNNDTYNNNEEDDDDGDYTEPYDELLVQFLDESNQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSTVTGITPLSHMRLGLGSTPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLNERDTLIAEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKHQLQAEVQQLQEQLDSYKSQGKGRGKGSSSNGPIASDDDDYEAQREANKIIMDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00899574; iTF_00760088;
- 90% Identity
- -
- 80% Identity
- -