Gvir009585.1
Basic Information
- Insect
- Gymnocheta viridis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_956483585.1
- Location
- OY101441.1:6242339-6255044[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2 4.2e+04 -14.9 18.4 82 199 39 68 2 195 0.54 2 4 0.018 3.7e+02 1.4 2.4 22 59 233 274 207 307 0.51 3 4 1.2e-114 2.4e-110 369.7 25.9 1 299 342 638 342 639 0.93 4 4 0.14 2.9e+03 -1.6 3.7 220 245 667 692 642 713 0.47
Sequence Information
- Coding Sequence
- ATGTCAGTGGAACAAAAAGTAACTGATAAAAATGTTGGGGGTACAGCAACAACCACAAATTCGAGTTCAACAAAATCTAATAAGAAGAACAAAAACtccaataacaacaataacaatagcaacaagaaattcattaaaaaatcattgaaaatatcaaaaaataaaaagcatgcAAACATTActaatagcaacaacaaaaatatgaataacaaaaacaacattaacaacagcaacattagTAGCAGCAGCAACTGCGGCAACAACAATGTTGGAGTAGCAAACGATGAAATCATCGAGGAGTTGTTTGATTTTAGCGATACCGATTTAAAAGAACTCGACGAAGAAATTAAAAacggcaacaacaacagcaacaattccATTATTAGTTCGGAGCTTTTGACTGAAGACAGTAATAAATTGAAGGAAATTGGGGAGGTTGATAACGATTCAGAGGTGCAATTGCAAACTATGACAAGTGCTAATAATAATGAAGTAGAAAAGAAAGAACAACAACAGGTAGGACAAGTATTGTTATCGTCGCCAATTGCTAGCGTTGATAAACAAAACGAAGACATTCCAGAAGACAATGAATTAGTCACGACAACGGCACcaacaacaaacaatataataagCGCAAAAGGAAATGTAGATATAAACGAAATTAATAAAGTCCAGCAAAAACTAGAACCATTCAAGTCTAAAGAAAACGagcaaaaagaaattaacaaataCTCTAGAGACACTACCGTACAAATCTCCAATAGTTCCATTGTTACTGAACATTCCTCGAGCTCTGAGACTGACAACAATGACCACAAAGTGACAACATCTTCAGACGTAAAGTCTACAGACGATACTACAGAGTCGTCGCCGTCGTTTATTGACATTCCGGAAGGTAGTTATTGCAAGGAAAATAATAGCAATGTTCCAAATAATGATAATGacgaagatgatgatgatgatgagtaTGCCGAACCATATGATGAACTGTTAGTGCAATTCCTTGATGAATCCAATCAGATTGCTGAGGCTAGATTAGCTGCTAGAAGGCATGCTAGAGCGGAAGCTCGAGAAATACGTATGCGAGAATTAGAACGGCAACAGAAGGAACAAGAATCTAATGCAGATCGTGTTTTTGATATGCATTCAACAGTAACTGGGATAACGCCATTGTCACACATGCGTCTGGGGTTGGGAAGTTCACCGGTTACAGGTTTACTAAATTCAACAAGAGGCAACTCTATGTCTTCAAGACGCAGCAGTGAAGATTCGCTAGAAGAAGAAGGCCGCAGCTTAAGAGATATTCGCCATGAgttaaaaGATGTCGAAGAACGATTTCGCAAGGCTATGATAGCGAATGCTCAGTTGGATAATGATCGTGCCTCACAAACGTATCAAATACAGTTGTTAAAAGATAAACTGGAAGATATGGAAGAATCATATTCACAATTAGTGCGTGAATGTAAGGAAAAGACACGCGATTGTAATGCCTTAAAACGATCGTTGGATAAACTAAGCGAAGAGCTAAAACTGGTACAGGGTCAGCTCAGTGAGCGTGACACACTGATAGCGGAACAAGGTTTAGTTATTGTGGCAGTTGAGAATGATGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTGGGTTCGGTACAAGGATCATTAGaTGTCCGACTTAAGAAATTCAGCGAAGAGAAACAACAACTCCAGTCTGAAGTTCAACAATTGCAGGAACAATTAGAATCATATAAAAGTCAGGGCAAAGGTCGAGGTAAAGGCAATTCTTCTAATGGTCCTTTAGGTTCAGATGATGATGATTACGAAGCTCAAAGAGAAGCTAACAAAACCATTATGGATTATAAATATAAGTTACAAAAAGCTGAACAGGAAATTGCTAGTCTTCAATCAAGCTTAGCACGTTCTGAAACACAAGTTATACGCTACAAAAGTACAGCTGAAGCTGCCGAAAAAGCCGAGGCCGAACTTAAAATCGAAAGAAGGAAACTGCAAAGAGagAATCGCGAGGCAATGGAAAAGCTTGAAGAATTAGAAACATCAAATAATCATCTTCTTAAACGTTTGGACAAATTAAAGAATGCCAAAAGTGCTTTGCTAAAGGATCTCTGA
- Protein Sequence
- MSVEQKVTDKNVGGTATTTNSSSTKSNKKNKNSNNNNNNSNKKFIKKSLKISKNKKHANITNSNNKNMNNKNNINNSNISSSSNCGNNNVGVANDEIIEELFDFSDTDLKELDEEIKNGNNNSNNSIISSELLTEDSNKLKEIGEVDNDSEVQLQTMTSANNNEVEKKEQQQVGQVLLSSPIASVDKQNEDIPEDNELVTTTAPTTNNIISAKGNVDINEINKVQQKLEPFKSKENEQKEINKYSRDTTVQISNSSIVTEHSSSSETDNNDHKVTTSSDVKSTDDTTESSPSFIDIPEGSYCKENNSNVPNNDNDEDDDDDEYAEPYDELLVQFLDESNQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSTVTGITPLSHMRLGLGSSPVTGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLVRECKEKTRDCNALKRSLDKLSEELKLVQGQLSERDTLIAEQGLVIVAVENDDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQSEVQQLQEQLESYKSQGKGRGKGNSSNGPLGSDDDDYEAQREANKTIMDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00900580;
- 90% Identity
- -
- 80% Identity
- -