Lqua045990.1
Basic Information
- Insect
- Leptura quadrifasciata
- Gene Symbol
- -
- Assembly
- GCA_963675555.1
- Location
- OY776677.1:148359003-148400002[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.003 0.56 12.9 1.6 2 23 183 205 183 205 0.95 2 21 0.1 19 8.0 1.0 1 19 333 351 333 353 0.97 3 21 0.8 1.5e+02 5.2 6.2 1 23 383 406 383 406 0.92 4 21 1.9 3.6e+02 4.0 0.1 5 20 416 431 415 433 0.91 5 21 0.015 2.9 10.6 0.3 1 23 439 462 439 462 0.94 6 21 6.2e-05 0.011 18.2 1.9 2 23 533 554 532 554 0.97 7 21 0.24 44 6.9 0.1 1 23 569 591 569 591 0.85 8 21 0.00091 0.17 14.5 0.4 2 23 595 616 594 616 0.96 9 21 0.00024 0.045 16.3 0.1 2 23 647 668 646 668 0.96 10 21 4.7 8.7e+02 2.8 0.6 1 23 691 714 691 714 0.92 11 21 0.024 4.4 10.1 1.6 2 23 728 749 727 749 0.97 12 21 2.1e-05 0.0039 19.7 6.5 1 23 786 808 786 808 0.98 13 21 0.088 16 8.3 0.7 3 23 825 845 825 845 0.95 14 21 0.00034 0.062 15.9 1.5 1 23 868 890 868 890 0.98 15 21 0.011 2.1 11.1 0.4 2 23 905 927 904 927 0.95 16 21 0.00017 0.032 16.8 1.3 1 23 945 967 945 967 0.95 17 21 0.22 41 7.0 0.0 1 23 1008 1031 1008 1031 0.95 18 21 0.0005 0.092 15.3 2.1 2 23 1042 1063 1042 1063 0.97 19 21 8.6e-05 0.016 17.7 0.3 1 23 1129 1152 1129 1152 0.97 20 21 3e-05 0.0056 19.2 1.1 1 23 1160 1182 1160 1182 0.98 21 21 0.0067 1.2 11.8 0.1 1 23 1197 1220 1197 1220 0.96
Sequence Information
- Coding Sequence
- ATGGCAGACTCAAGGCTCGGTAATTTCCAATCTTGCTGTAGACTGTGCTTATGTGAGAAGTTGGATAGTTTAAAGTCTGTTTTTGATGAAACAACAGAAGATCGCTCGTTACCGCAGAAGATTTTACAATTTGTTGCTGTTGAAATAACCAACTCTGACAAGGTCACAACGATGGTCTGCAACGAATGTGTGATCAAAGTAAATCAATGGCACAAATATAAGCAAGAATGCTCCGAGAACCAAAGCAAACTAGATCGGTGGTTTAACAGCTGTCCGATGATGAACGGAATAGGATTAGCAGATATGAGTCTCCAAATAAAGGAGGAACCCGCCGACGAGCCGACTGGGGAAACGGATGAACATATGTCCGAACATCCTGGAAACTGTATTGCTGAAGTTCTTGTTAAAAACGAACTGATAGAACAATCCGATGAACCCATGGAAGAAGAATATAATGAATTGCCTCCCCCTCTCACACCTCACCCGCCTGATTCAAATATGGACTCTGAGAATTCGCAGGATACTCCTGGTACCGTGAATAATAGACAGTGTACGATTTGCAACAAACTGTTCAGTAGTTCAGGAAATAGAAGAAAGCATGAAAAGCAAATTCATGGGAAACATCAGCCAGGAGCTGATACGGGTAGGAGGAGTCAAATGGGTACGGGTTCGCTTAACAGTCCCGATGCTGCCACCAATCAGCAAGATGGATTCCACGACGGTGCAGGAACCCAAGAAAATGCCGATGGATCTGAACCAGTCAACGAGACAGAGCAACAGAAAATACAATTTGCAGCTGGTCTAAAGTTGTTGCAAAAAAATGCCACTCCGATTTCCTGCGAACCTCTCTCCAAAATAGAATTGAGttacattgaaaaatgtaaaGCGATGGCCGTGATGCACAAGTCGCTAGAATGTGCATGTCACAATGTGTTACACCCCAATCTCAAAGGGCTGCTGTCCCACCTCAGGGCTCTGAGGATATGGTTCCCTGTGTTTACTTGCTACAACTGCATGATCACATTTACCGACAGGTCTACTTTCACTAAGCATAGCGTTAGATGCCCTAAAACTCAACTAGAAACGATAATCAAGTTGAGCAACTTGAAGAAACGTAGCGAAGTTAAAACTAGGCTATACCAGAATTTTAAATGCACTTCCTGCAAGTTTATGTTCAGTTTTCATGACGATTATTGCAAACACGTTGATGAGGAGCATGTGGCTACCGAACCTCCTGTCTTATGTAACTGTGGCAGAGCTTTCGATAACATGGAGGACTTCAAGGACCATGTTTATGTCAGCTGCTTAGTGGAGTACTATTGCGACATTTGCTTCATCACCACCAAAACTCTAGATGCTTTCCAGAAACATGCTATGGAAGTGCACGACAGCTCGGAAGGCTTTATTTTGCTACAAGACGATAATTACAAAATGCGTAAGCCATTCCATCATAAAGAAGCTGCAGATGAGAGCGTCATAGTTACAGGAAAAAGGGAACGGAGAATGTCCATCAAAACTCCCATTCTGGAGCCTGACGATGACGACGATATACCTAGGAAAGTTATAAATCCTGCTATATTGAATGCCAATTCAAAGGAATGTCCGTTGTGCGGTAAGGAATATTCCAGCCATAACAACATGATACGTCACTACAAAACTCACTTGGAAGTTACCAGGCCAGTTGAAGTGACAGATGACTCATTCTACTCGTGCCCAGAATGCGGCGGCATGTACAACACGAGCGAGTGGCAAGTGCACTTGGCAGAGAAGCACGAGCCCAAGACCTGCGGGGAGTGTGGAAAAATATTCCAGTTCCAAAGTGAGCTAGATCAACATAGAAGTGTACACTTGAACCTCAAAGTATACAGGGATTCTAAAACGCAGTCCTACAAATCGACAATGGTCAGCCCCGTGTCAGAAGGAGGAGAGGTTATGCTTATGTGCGAGGTATGCGACGTGATGTTTGCTACTAAAGAGGAACTGAAAGAGCACAAGCTTACACACGAAGGCAATAATACACCGGTTCTTGAATTCAAAGAAGAGCAGGAAGTCGACTCGAAGGAGAGCAGATATGCTTGTAAGCCATGTAATAAGCAGTACTCTAGCTATGGCGGTATTTGGGACCACAATAAAAAGAAGCATCCAGAAAAGAAAACTCCATTCACTGACGAGTGGCCGAAGCAATGCAAGCTGTGCGACAAGGTGTGCGCCACTGGTGCCGCTTACTTTAGGCATAAACAGATCCACGAAAAAGATAGAATAAGTGGTGAAGACGCTGACGCTACGCCGGCCAAGATGCCCATGATGAGGCCTAAGAGGGAAGCTGGCACGGAAGAAGAAGACGAAGAGTCCTATCACACGTGCAAACGTTGCTTTAAAGTTTTCTCTTCAAGGTACAATCTAAAGAATCACATGAAATCTCATGGTATAAATCTCAACCCCACCAACAAGAAGGTGGTGAAGAAAGTTTGGTGCGACATATGCCATCAGTCGTTTGCGACCAACGAAATTTTGGCCAAGCACAAAGAAGAACATGGTGTGGAGGAAATGCCTCAGCTGACCAACCAGGTTGAGGGACTGGATAACAAAGTACCATTTATTTTCACTTGTGATGTCTGCGTGATGACTTTCACTACCAAAATGGCCCTGAAGAAACATAAAGAAAAGCACGCTCTAGAGCAGAAGCCTGTTATGCAGAAAGCAGGTCAGGTTTACTGCAAGTACTGTAAAGTCGCTTTCGACTCGGTGATTCTGTTGACCCAGCACATGCATGTTGAACACGATGAGACTGCCAAGCCAAAAATAAACAAAGTAAAAGAGAAGCCACGTCAATTCATCTGCTCAATTTGCAAGAAACATTTCATGACCTCATCAGCATTATCCACCCACATGGGCTGGCATAAACGCAGTCCTAACACCGGGGACAGTAGCAAGCCCGCCAAAGTGCTGAAACAAACTAAAATCATCAGCAAACTTgccaacaatttaaaaccaaagcAGGAGCCGATTGATCCCCCTGAGTACCAGTGCGCAACTTGCCTGGCCGAATTTCCAAACGATACAGCGCTACAAGTTCACATCCTGGAAAAACACCGCAGCGTGAGCGCCATCATGCTTATTCCACGTTGCAACACATGCAACAAAGATTTCAACAACCAAGACGAGTACGAAACACACAAACGGCTCCATGATTTCTTGGAGCGACAAAAGCAACACGAGCAGCAGATGCTGCTGCAACAGCAGGAGGAGAAATCTGGAGGATCGATGGAGCAATCAACATCATCTCTGTCGGCCGCAAAGGAACTCTCGGCAAAACAGCTACCGCAACAGCAAAAGCCCCTAGCTCTACCGCCGCAATCCATGCAGACGAAGTTCGTTAAGGGTTTTCCTTGTAAATATTGTAACGCGGCGTTCAGCCGGGCTGACACGTTGAGCGGCCACATCAGGCAGTTCCATAAAGAGTACGTGCAAAACGAGTTCAAGTGCACCCAGTGCGACAGGGTGTTTGACAAACAGAACTCTCTGAGCATTCATCTGAAAGTGCACGAAAAGCAGCGCACGGTGGTGTCATCTTCATCTAAGCCGTTGTTCTCTTGTTCCATTTGCAGCATGGGCTTTGACTTACCCAAAGATCTGAGAGCGCATACAATCAGCGCTCATCCGTTCTGA
- Protein Sequence
- MADSRLGNFQSCCRLCLCEKLDSLKSVFDETTEDRSLPQKILQFVAVEITNSDKVTTMVCNECVIKVNQWHKYKQECSENQSKLDRWFNSCPMMNGIGLADMSLQIKEEPADEPTGETDEHMSEHPGNCIAEVLVKNELIEQSDEPMEEEYNELPPPLTPHPPDSNMDSENSQDTPGTVNNRQCTICNKLFSSSGNRRKHEKQIHGKHQPGADTGRRSQMGTGSLNSPDAATNQQDGFHDGAGTQENADGSEPVNETEQQKIQFAAGLKLLQKNATPISCEPLSKIELSYIEKCKAMAVMHKSLECACHNVLHPNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTKHSVRCPKTQLETIIKLSNLKKRSEVKTRLYQNFKCTSCKFMFSFHDDYCKHVDEEHVATEPPVLCNCGRAFDNMEDFKDHVYVSCLVEYYCDICFITTKTLDAFQKHAMEVHDSSEGFILLQDDNYKMRKPFHHKEAADESVIVTGKRERRMSIKTPILEPDDDDDIPRKVINPAILNANSKECPLCGKEYSSHNNMIRHYKTHLEVTRPVEVTDDSFYSCPECGGMYNTSEWQVHLAEKHEPKTCGECGKIFQFQSELDQHRSVHLNLKVYRDSKTQSYKSTMVSPVSEGGEVMLMCEVCDVMFATKEELKEHKLTHEGNNTPVLEFKEEQEVDSKESRYACKPCNKQYSSYGGIWDHNKKKHPEKKTPFTDEWPKQCKLCDKVCATGAAYFRHKQIHEKDRISGEDADATPAKMPMMRPKREAGTEEEDEESYHTCKRCFKVFSSRYNLKNHMKSHGINLNPTNKKVVKKVWCDICHQSFATNEILAKHKEEHGVEEMPQLTNQVEGLDNKVPFIFTCDVCVMTFTTKMALKKHKEKHALEQKPVMQKAGQVYCKYCKVAFDSVILLTQHMHVEHDETAKPKINKVKEKPRQFICSICKKHFMTSSALSTHMGWHKRSPNTGDSSKPAKVLKQTKIISKLANNLKPKQEPIDPPEYQCATCLAEFPNDTALQVHILEKHRSVSAIMLIPRCNTCNKDFNNQDEYETHKRLHDFLERQKQHEQQMLLQQQEEKSGGSMEQSTSSLSAAKELSAKQLPQQQKPLALPPQSMQTKFVKGFPCKYCNAAFSRADTLSGHIRQFHKEYVQNEFKCTQCDRVFDKQNSLSIHLKVHEKQRTVVSSSSKPLFSCSICSMGFDLPKDLRAHTISAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01370076; iTF_01296719; iTF_01290616;
- 90% Identity
- -
- 80% Identity
- -