Smel033762.1
Basic Information
- Insect
- Stenurella melanura
- Gene Symbol
- -
- Assembly
- GCA_963583905.1
- Location
- OY757312.1:13861780-13899597[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.0043 0.61 12.9 1.6 2 23 183 205 183 205 0.95 2 20 0.16 22 8.0 1.0 1 19 337 355 337 357 0.97 3 20 1.1 1.6e+02 5.2 6.2 1 23 387 410 387 410 0.92 4 20 0.049 6.9 9.6 0.4 1 23 443 466 443 466 0.90 5 20 7.8e-05 0.011 18.4 1.5 2 23 537 558 537 558 0.98 6 20 0.093 13 8.7 0.0 1 23 574 596 574 596 0.91 7 20 0.0013 0.19 14.5 0.4 2 23 600 621 599 621 0.96 8 20 0.00061 0.087 15.5 0.1 2 23 652 673 651 673 0.96 9 20 6.7 9.6e+02 2.8 0.6 1 23 695 718 695 718 0.92 10 20 0.054 7.7 9.4 1.4 2 23 732 753 731 753 0.97 11 20 3e-05 0.0042 19.7 6.5 1 23 788 810 788 810 0.98 12 20 0.066 9.4 9.1 1.1 3 23 827 847 827 847 0.95 13 20 0.00048 0.068 15.9 1.5 1 23 872 894 872 894 0.98 14 20 0.0098 1.4 11.8 0.7 2 23 909 931 908 931 0.94 15 20 9.2e-05 0.013 18.1 0.4 1 23 949 971 949 971 0.95 16 20 0.32 45 7.0 0.0 1 23 1012 1035 1012 1035 0.95 17 20 0.00071 0.1 15.3 2.1 2 23 1046 1067 1046 1067 0.97 18 20 0.00012 0.017 17.7 0.3 1 23 1130 1153 1130 1153 0.97 19 20 4.3e-05 0.0061 19.2 1.1 1 23 1161 1183 1161 1183 0.98 20 20 0.016 2.2 11.1 0.1 1 23 1198 1221 1198 1221 0.94
Sequence Information
- Coding Sequence
- ATGGCAGACTCAAGGCTCGGTAATTTCCAATCTTGTTGTAGACTGTGCTTGTGTGAGAAGTTGGACACTTTAAAATCCGTTTTTGATGAAACAACAGAAGATCGCTCGCTACCGCAGAAGATTTTACAATTTGTTGCTATCGAAATAACCACTTCTGACAAAGTCACGACAATGGTCTGCAGCCCATGTATCATCAAAGTTAACCAGTGGCACCAGTACAAGCAAGAATGTTCCGAAAACCAAAGCAAACTAGATCGATGGCTCAACAGTTGTTCGACGATGAATGGAATAGGAGATGTTAGTTTTCAAATAAAGGAGGAACCTGCAGAGGAACCGACTGGAGAAGTGGATGAGAATATGTCTGAAACTCCTGAAAATTGTATTGCAGAAGTTCTTGTTAAGAACGAACCAATGGAACAATCTGATGAACCGATGGAAGAAGAATATAATGAATTACCTCCGCCTCTCACGCCTCATCCACTCGACTCAAATATGGATTCTGAAAACTCACAAGATAGTGGTACTCCAGGTACCGTGAATAATAGACAGTGTACAATTTGCAACAAACTGTTCAGTAGTTCTGGAAATAGAAGAAAGCATGAAAAGCAAATTCATGGGAAACATCAGCCAGGAGCTGATACGGGTAGGAGGACTCAAATGAATGCGGTTTCGCTTACCGATAGTCCCGATGCTCTTACCAATGCAACCAATCAGCAGGATGTACTCAATAATTCGATAGAAATCCTAGAAAATGCTGAAACAATTAACCCTCCCAACGAGAAGGAACAACAGAAAATACAATTTGCCGCTGGTCTAAAGTTACTGCAAAGAAATTCCACTCCAATTTCCTGCGAACCACTTTCAAAAATAGAACTGAGCTACATTGAAAAATGCAAAGCAATGGCTGTGATGCATAAGTCGCTAGAATGTGCATGTCATAACGTTGCACACCCCAATCTCAAAGGTCTCCTGTCTCATTTAAGGGCTCTCAGAATATGGTTCCCTGTTTTTACCTGCTACAACTGTATGATCACTTTTACCGATAGATCCACCTTTACCAAACACAACGTCCGTTGCCCTAAAACCTCACTAGAAACGATAGTCAAGTTGAGCAACTTGAAAAAACGTAGCGAGGTTAAAACTAGATTGTACCAGAATTTTAAATGCACTTCCTGCAAGTTCATGTTCAGTTTTCATGATGACTATTGCAAACACGTCGATGAGGAGCATGTGGCTACCGAACCACCCGTGATGTGTACCTGCAGCAGGGCATTCGACAATATGGAGGACTTCAAGGACCACGTTTATGTCAGCTGCTTAGTGGAGTACTATTGCGACATTTGTTTCATTACCACCAAAACTCTGGACGCATTCCAAAAACATGCCACGGAAGTGCATGATAACTCGGAAGGGTTTATCTTATTGCAAGATGATAATTACAAGATGCGGAAGCCATTCCACCACAAAGAAGCTGCCGATGAAAGCGTTATAGTTACAGGAAAACGAGAAAGGCGAATGTCTATCAAAACTCCCATTTTGGAACCCGACGATGACGAAGACATTCCAAGGAAAGTTATAAATCCTGCTATATTGTCTGCAAATTCAAGGGAGTGTCCACTATGCGGTAAGGAGTATTCGAGCCACAACAACATGATACGTCACTACAAAACCCATTTGGAAGTAACCGCGAGACCAGTTGAGGCGACAGATGATTCCTTCTACTCATGCCCAGAATGCGGCGGCATGTACAACTCAAGTGAATGGCAAGTGCATCTGGCAGAGAAACACGAGCCTAAGACTTGTGGAGAATGCGGAAAAATATTCCAATTCCAAAGCGAGCTAGATCAACATAGAAGCGTACACTTAAATCTCAAAGTGTATAGGGATTCTAAGACGCAGGCTTATAAAACGACAATGATAAGTCCCGTATCTGAGGGAGGTGAGGTTATGCTTATGTGTGAGATATGTGACGTGATGTTCGGTACCAAAGAAGAATTGAAAGAGCACAAGCTTACACATGATGGAAATGTGCCGATGCTTGAATTAAAGGAAGAACAGGAACCCGAAGTGAAGGAGAGCAAGTATGCTTGTAAGCCTTGCAATAAACAGTATTCTAGCTATGGGGGTATTTGGGACCACAACAAAAAGAAACATCCAGAAAAGAAGACTCCATTTACTGACGAGTGGCCGAAGCAGTGCAAGCTGTGTGATAAGGTATGTGCCACTGGCGCCGCCTACTATAGACATAAGCAGATTCATGAAAAAGATATAATAAGCACCGAGAACGCTGATGCCATGCCGTCCAAAATGCCTATGATGAAACCCAAGAGAGAAGGCACAGAAGACGACGAAGAGTCCTATCATACGTGTAAACGTTGCTTTAAAGTGTTCTCATCGAGGTACAATCTAAAGAATCATATGAAATCTCACGGTATAAATCTCCCTCCCACCAACAAAAAGGTTATGAAGAAAGTTTGGTGCGATATATGCCATCAGTCATTTACAAACAACGAAATTTTGGCTAAGCATAAGGAAGAACACGGTGCGGATGAGATGCCTCAGCTGGCAAACCAGGTTGAGGGATTGGATATGGATAACAAAGTACCGTTTATCTTCACCTGCGATGTCTGTGTGATGACGTTTACTACTAAAATGGCACTGAAGAAACACAAAGAGAAGCATGCTCTAGAGCAGAAGCCTGTCGTCCAGAAGCCAGGTCAGATTTATTGTAAGTACTGTAAGATCGCTTTCGACTCGATCATTCTTCTAACGAAGCACATGCACCTTGAACACGATGAGACTGCCaaaccaaaaattaataaaataaaagagaagCCTCGGCAGTTCGTCTGCTCTATCTGCAAGAAAAATTTCATGACCTCTTCAGCGTTGTCCACCCACATGGGCTGGCACAAGCGTAGCCCGAGCACCGGGGACAATAATAAACCCGCTAAAGTGCTGAAGCAAAACAAAGTAGTCAGCAAACTTGCCAACAATTTGCAGCCGAAACAGGAGCCAATAGATCCCCCTGAGTACCAATGTGCGACTTGCCTTGCTGAATTTCCAAATGACACAGCACTACAAGTTCACATCCTAGAAAAACACCGCAGTGTGAGTGCCATCATGCTTATTCCACGTTGTAACACTTGCAATAAAGATTTTAACAACCAAGACGAGTACGAGACTCACAAACGTCTCCACGATTTCCTGGAGCGGCAAAAACAACACGAACAGCAGATGCTGCTGCAGCAACAAGGTGCAGAGGAACAAGCTGGAGGACCGATGGAGCAATCAACATCAACGTCCAGTGCCAAGGAACTCGCGGCCAAACAGCAAAAGCCCCTAGCTCTACCGCCGACAAATATGCAGGCAAAGTTCGTGAAAGGTTTTCCTTGTAAATACTGCAACGCAGCGTTCAGCCGAGCTGATACGCTGAGTGGCCACATCCGTCAATTCCATAAAGAGTACGTGCAAAATGAATTCAAGTGCACCCAGTGCGACAGGGTGTTTGACAAACAGAACTCTTTAAGCATTCATCTGAAAGTTCACGAGAAGCAACGCACAGTGGTGTCTTCTCCAGCTAAACCGTTGTTCTCTTGTTCCATTTGTAGCATGGGCTTCGACTTACCCAAAGATCTGAGAGCGCATACAATCAATGCTCATCCGTTCTGA
- Protein Sequence
- MADSRLGNFQSCCRLCLCEKLDTLKSVFDETTEDRSLPQKILQFVAIEITTSDKVTTMVCSPCIIKVNQWHQYKQECSENQSKLDRWLNSCSTMNGIGDVSFQIKEEPAEEPTGEVDENMSETPENCIAEVLVKNEPMEQSDEPMEEEYNELPPPLTPHPLDSNMDSENSQDSGTPGTVNNRQCTICNKLFSSSGNRRKHEKQIHGKHQPGADTGRRTQMNAVSLTDSPDALTNATNQQDVLNNSIEILENAETINPPNEKEQQKIQFAAGLKLLQRNSTPISCEPLSKIELSYIEKCKAMAVMHKSLECACHNVAHPNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTKHNVRCPKTSLETIVKLSNLKKRSEVKTRLYQNFKCTSCKFMFSFHDDYCKHVDEEHVATEPPVMCTCSRAFDNMEDFKDHVYVSCLVEYYCDICFITTKTLDAFQKHATEVHDNSEGFILLQDDNYKMRKPFHHKEAADESVIVTGKRERRMSIKTPILEPDDDEDIPRKVINPAILSANSRECPLCGKEYSSHNNMIRHYKTHLEVTARPVEATDDSFYSCPECGGMYNSSEWQVHLAEKHEPKTCGECGKIFQFQSELDQHRSVHLNLKVYRDSKTQAYKTTMISPVSEGGEVMLMCEICDVMFGTKEELKEHKLTHDGNVPMLELKEEQEPEVKESKYACKPCNKQYSSYGGIWDHNKKKHPEKKTPFTDEWPKQCKLCDKVCATGAAYYRHKQIHEKDIISTENADAMPSKMPMMKPKREGTEDDEESYHTCKRCFKVFSSRYNLKNHMKSHGINLPPTNKKVMKKVWCDICHQSFTNNEILAKHKEEHGADEMPQLANQVEGLDMDNKVPFIFTCDVCVMTFTTKMALKKHKEKHALEQKPVVQKPGQIYCKYCKIAFDSIILLTKHMHLEHDETAKPKINKIKEKPRQFVCSICKKNFMTSSALSTHMGWHKRSPSTGDNNKPAKVLKQNKVVSKLANNLQPKQEPIDPPEYQCATCLAEFPNDTALQVHILEKHRSVSAIMLIPRCNTCNKDFNNQDEYETHKRLHDFLERQKQHEQQMLLQQQGAEEQAGGPMEQSTSTSSAKELAAKQQKPLALPPTNMQAKFVKGFPCKYCNAAFSRADTLSGHIRQFHKEYVQNEFKCTQCDRVFDKQNSLSIHLKVHEKQRTVVSSPAKPLFSCSICSMGFDLPKDLRAHTINAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00886711;
- 90% Identity
- -
- 80% Identity
- -