Rmor036973.1
Basic Information
- Insect
- Rhagium mordax
- Gene Symbol
- -
- Assembly
- GCA_963680705.1
- Location
- OY796661.1:26759055-26782547[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.13 15 8.1 1.0 1 19 281 299 281 301 0.97 2 19 4 4.5e+02 3.4 6.1 1 23 331 354 331 354 0.92 3 19 3.9 4.4e+02 3.5 0.1 5 20 364 379 363 381 0.91 4 19 0.04 4.5 9.7 0.2 1 23 387 410 387 410 0.90 5 19 6.8e-05 0.0077 18.4 1.5 2 23 481 502 481 502 0.98 6 19 1.1 1.2e+02 5.2 0.1 1 19 517 534 517 539 0.72 7 19 0.00039 0.045 16.0 0.4 2 23 543 564 542 564 0.96 8 19 0.00054 0.062 15.6 0.2 2 23 595 616 594 616 0.96 9 19 3.5 4e+02 3.6 1.2 1 23 639 662 639 662 0.93 10 19 0.031 3.5 10.1 1.5 2 23 676 697 675 697 0.97 11 19 2.6e-05 0.0029 19.8 6.5 1 23 733 755 733 755 0.98 12 19 0.00063 0.072 15.4 1.1 3 23 772 792 772 792 0.97 13 19 0.00085 0.097 15.0 1.4 1 23 815 837 815 837 0.98 14 19 0.0015 0.17 14.2 0.5 2 23 852 874 851 874 0.95 15 19 0.0022 0.25 13.7 0.6 1 23 892 914 892 914 0.95 16 19 0.00016 0.018 17.3 1.4 2 23 989 1010 989 1010 0.97 17 19 0.0001 0.012 17.8 0.3 1 23 1072 1095 1072 1095 0.97 18 19 3.7e-05 0.0042 19.2 1.1 1 23 1103 1125 1103 1125 0.98 19 19 0.014 1.5 11.2 0.1 1 23 1140 1163 1140 1163 0.94
Sequence Information
- Coding Sequence
- ATGGCAGACTCAAGGCTCGGTAATTTCCAATCTTGTTGTAGACTGTGCTTGTGTGAGAAGTTGGACACTTTAAAATCTGTTTTTGATGAAGCAATAGAAGATCGGTCGCTACCGCAGAAGATTTTACAATTCGTAGCTATCGAAATAACCAATTCTGACAAAATTACCACAATGGTCTGCAGCCAATGTATAACCAAAGTTAATAATTGGCATGAATACAAACAGGAATGTTCTGACAACCAAAGCAAACTACAGAAATGGTTAAACAGCTGCCCAACGAATGGAATAGCAGATATGAGTATTCAAATAAAGGAAGAACCTTCCGAGGAACCCAGTGGCGAAACGGACGAAAATATGTCTGAAGCTCCTGAAAATAATATCGTGGAAGTTCTAGTTAAAAATGAGCTGATGGAACAACCTGATGAGCCTATGGAAGAAGAATATAATGAATTACCTCCCCCTCTTACGCCTCACCCACCCGACTCAAATATGGATTCTGAAAACTCACAGGATAGTGGTTCCGTTgATGCTGTCAATCTTGGTAATCATGATATACCACACGATGCACTAGAAACCCAAGAAAATGCCGAAAGACTCGATCCACTCAGTGAGACTGAAcaacagaaaatacaatttgcAGCTGGTTTGAAATTATTGCAAAGAAATTCCACTCCAATTTCGTGTGAACCTCTCTCGAAAATAGAGCTAAGctatattgaaaaatgcaaaGCAATGGCTGCGATGCATAAGTCATTAGAATGTGCATGCCACAACGTAGCACACCCTAATCTCAAGGGTTTACTGTCCCATCTTAGAGCTCTAAGAATATGGTTCCCAGTTTTTACATGCTATAATTGCATGATCACGTTTACAGACAGATCCACATTTACTAAACATAGCGTCAGATGTCCTAAAACTCCCCtagaaacaataattaaattgagtAACTTAAAAAAACGCAGCGAAGTTAAAACCAGATTGTATCAGAACTTTAAATGCACTTCCTGCAAGTTTATGTACAGCTTTCATGATGATTATTGCAAACATGTAGATGAGGAACATATAGCTAATGAACCACCTGTTATATGTACCTGCGGAAGAAATTTTGACAACATGGAGGATTTTAAAGATCACGTATATGTCAGCTGTTTAGTGGAGTACTATTGTGATATTTGCTTTATCACTACAAAAAATTTGGATGCGTTCCAAAAACATGCCGCTGAAGTACACGATAATTCAGAAGGGTTCATCTTATTGCAGGACGATAATTATAAGATGCGAAAACCTTTCCACCATAAAGAGGCTTCTGATGAAAGTGTTATTGTCACTGGAAAAAGAGAAAGGAGGTTGTCCATCAAAACTCCCATCTTGGAACCCGACGATGATGAAGATACGGCAAGAAAAGGTAATAATCCCACTATACTATCAGCAAATTCACGAGAATGCCCGCTTTGTGGTAAGGAATATTCAAGTCACAACAATATGATACGTCATTACAAAACACATTTGGAAGTCGCAAGACCAGTCGAAGCAACAGACGATTCCTTCTATTCTTGTCCAGAGTGTGGTGGTATGTATAATACAAACGAGTGGCAGGAGCACTTGGCAGAAAAACACGAACCCAAAACTTGCGGAGAATGTGGGAAAGTATTCCAGTTCCAAAGTGAACTGGATCAACATAGAAGTGTGCACTTAAACCTCAAGGTGTATAGAGATTCTAAAACACAATCTTACAAAACTACAATGATCAGTCCTGGATCTGAGGGAGGTGAGATTATGCTCATGTGTGAGATTTGTGACGTAATGTTTGGTACTAAAGAAGAATTGAAAGATCATAAACTAACACACGAAGGAAATATACCGTTGCTGGAGCCACCAGAGGAACAGCCACCCCAAGTAAAGCAGGAGAGCAAATATTCCTGTAAGccttgtaataaattttattctagCTATGGTGGCATATGGGACCATAACAAAAAGAAGCATCCAGAGAAGAAAACTCCTTTCACTGACGAATGGCCGAAACAATGCAAGATGTGTGATAAAGTGTGCGCCACTGGTGCTGCTTACTATCGACATAAGCAGGTACATGAAAGAGAGAGAATGTCTGCTGAGAATGCTGATATGTTACCATCAAAAATGCCTATGATGAAAGCTAAAAGAGAAGCTGGCACGGAAGATGACGAGCAATCCTACCATACATGCAAACGTTGCTTTAAGGTGTTTTCCTCAAGATACAATCTAAAGAATCACATGAAATCTCATGGTATAAATATCAACCCTACCAACAAGAAGATTGCAAAGAAAGTTTGGTGTGACATATGTCACCAGTCGTTTGCGAATAATGATACTTTGGCTAAGCACAGAGAGGAACATGGCACGGAGGAGATGCCTCAACTAACAAACCAAGTTGAGGGATTGGGTAATAAAGtaccatttatatttacatgtGACGTATGTGTGATGACGTTTAACACCAAAATGGCGTTAAAGAAACACAAAGAGAAGCATGCCCTAGAGCAGAAGCCCAATATTCATAAGCCAGTCCAGGTGTACTGTAAATACTGCAAGATTGCATTCGATTCGGTGGCCCTTTTAACAAAACACATGCACATTGAACATGAAGAGACTGCTaaaccaaaaacaaataaaataaaagaaaaaccacgACAATTTAACTGCAATATCTGTAAGAAAAATTTCCTGACTTCTTCAGCTTTGTCCACCCACATGGGTTGGCACAAGCGCAGTCCAAACACTGGGGATAATAGCAAACCCGCCAAAGTactgaaacaaaacaaaatcatCAATAAACTCACGAACAATTTCAAAATCAAACAGGAACCTATAGATACTCCCTTATTCCAGTGTGCGACTTGCCTAGCTGAACTTCCAAATGATACAGCTTTACAAGTTCACATTCTAGAAAAACATCGCAGCGTGAGTGCCATCATGCTTATTCCTCGTTGTAACATATGCAACAAAGATTTTAACAATCAAGATGAATATGAGACGCACAAACGCTTGCATGATTTCTTAGAAAGACAGAAACAACACGAGCAACAGATGCTGCTGCAGAAGCAGGAAGCAGAGGAGCAATCTGAAGAACTGATGGACACAGCATCAAGTCCGTCGGcaggaaaggaaattttaccaAAGCAAAAACCTCTTGCTCTTCCTCCTTCATCTATGCAAGCGAAGTTCATTAAAGGTTTTCCTTGTAAATATTGTAATGCGGCGTTTAGCCGGGCTGACACTCTGAGCGGTCACATTCGTCAATACCATAAAGAGTATGTGCAAAACGAATTCAAATGCACACAGTGCGATAGAGTATTCGACAAGCAAAACTCTTTAAGTATTCATCTGAAAGTTCACGAGAAACAGCGCACAGTGGTGAGCTCTTCGGCTAAGCCGTTGTTTTCTTGTTCCATTTGCAGCATGGGCTTTGACTTACCTAAGGATCTGAGAGCACACACAATCAACGCTCATCCGTTCTGA
- Protein Sequence
- MADSRLGNFQSCCRLCLCEKLDTLKSVFDEAIEDRSLPQKILQFVAIEITNSDKITTMVCSQCITKVNNWHEYKQECSDNQSKLQKWLNSCPTNGIADMSIQIKEEPSEEPSGETDENMSEAPENNIVEVLVKNELMEQPDEPMEEEYNELPPPLTPHPPDSNMDSENSQDSGSVDAVNLGNHDIPHDALETQENAERLDPLSETEQQKIQFAAGLKLLQRNSTPISCEPLSKIELSYIEKCKAMAAMHKSLECACHNVAHPNLKGLLSHLRALRIWFPVFTCYNCMITFTDRSTFTKHSVRCPKTPLETIIKLSNLKKRSEVKTRLYQNFKCTSCKFMYSFHDDYCKHVDEEHIANEPPVICTCGRNFDNMEDFKDHVYVSCLVEYYCDICFITTKNLDAFQKHAAEVHDNSEGFILLQDDNYKMRKPFHHKEASDESVIVTGKRERRLSIKTPILEPDDDEDTARKGNNPTILSANSRECPLCGKEYSSHNNMIRHYKTHLEVARPVEATDDSFYSCPECGGMYNTNEWQEHLAEKHEPKTCGECGKVFQFQSELDQHRSVHLNLKVYRDSKTQSYKTTMISPGSEGGEIMLMCEICDVMFGTKEELKDHKLTHEGNIPLLEPPEEQPPQVKQESKYSCKPCNKFYSSYGGIWDHNKKKHPEKKTPFTDEWPKQCKMCDKVCATGAAYYRHKQVHERERMSAENADMLPSKMPMMKAKREAGTEDDEQSYHTCKRCFKVFSSRYNLKNHMKSHGININPTNKKIAKKVWCDICHQSFANNDTLAKHREEHGTEEMPQLTNQVEGLGNKVPFIFTCDVCVMTFNTKMALKKHKEKHALEQKPNIHKPVQVYCKYCKIAFDSVALLTKHMHIEHEETAKPKTNKIKEKPRQFNCNICKKNFLTSSALSTHMGWHKRSPNTGDNSKPAKVLKQNKIINKLTNNFKIKQEPIDTPLFQCATCLAELPNDTALQVHILEKHRSVSAIMLIPRCNICNKDFNNQDEYETHKRLHDFLERQKQHEQQMLLQKQEAEEQSEELMDTASSPSAGKEILPKQKPLALPPSSMQAKFIKGFPCKYCNAAFSRADTLSGHIRQYHKEYVQNEFKCTQCDRVFDKQNSLSIHLKVHEKQRTVVSSSAKPLFSCSICSMGFDLPKDLRAHTINAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00886711;
- 90% Identity
- -
- 80% Identity
- -