Lace008661.2
Basic Information
- Insect
- Leptothorax acervorum
- Gene Symbol
- -
- Assembly
- GCA_035220615.1
- Location
- JASTWQ010000049.1:254038-261715[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.9e-13 4.2e-09 37.3 0.3 10 69 285 342 280 347 0.85
Sequence Information
- Coding Sequence
- ATGGACGTCGCGAACGTGAATGGCGGGAACGCCGCGGTACCGCGCGAGGATTCTAACCTCGAaagtggcggcggcggcggcggcggtggtgctAGTGGACCTAGTGGTGGTACGGCGGTCGTATCAATGGTGGAGACGCAGAACTCGAGCGACAAGGCACAACTGACGGCAGGCGGTAATGCGGACGCGCAGGAGGTTAACGGCGAGCTGAGAGGCACGCCCAGGAAACACGGCACGTCGCTCCCCCGCAGGAGGCTTAGAAAGTTCAAGGCCAACTCCATGGGCACGATGGAGATCGACACGGCGGATGCGCCTGGGACGAGGGGACGCAAGCGCAAGCTCTCAGAGTACGAAGACGCCAGCTCCGAGGACTCCGAGGAGTTCAACGGCTTCGACTCCCAAGGGCTCGAACTCCAACCAGGCAGTCACGTTCTGAGCAAACTCATTGCTGAAGCAGAAATAGCAGAAGCACAAGTCACAAAACGCGTGAAATATTCTACGAGGTCTTTCGACGCTAGAGAAAGAATAGATGACAATCAAGATTTTGATCACATGAGAACGTACGTTTACGAAACGGATAGTTTCGAGCATTTGGATatgacaaatattaaaaaagaaaaagagtccGATAAATCGGAAACAGATTCTATTGATATACCAAATAGCATAGATTCCGAAGTCGAGCCAAACAAAATTGATATAACTTCCATTAGATCGGCATATTCATCGTCGGCGGCGAGTAGTCCCTCGGCAACATCGCAAAAATCAAAAGGTAGCCTCATTTCTGGCGGCGCAAGTCCAGGGGGGAAGCATAAAACTCCTGTTGATATGTCAAACCCTTTATACAAAGAGCCATTTAAATATGGGTGGAAGCGAGAATTAGTATTTAGAGCTAGTCATGACTCTTCCTTCAAAAAAATGGCTGACATATATTACTACACACCAAAGGGGAAAAAGGTCAGGAGTTTTAGAGAAGTTGCAGAATCTCTTAATTCAAAGGAGCTGAGTATGGATAATTTCACATTCTTTAAAGAACCTATTGGGCTTAATGATCCAGAAAAGGAGATTATTCGAGATGCTAAAAGATCACGAGGTGGATCTATGGGTGGATCttcaataaagaaatataatagaaaatctGTAGCAATAAAAAAGACAGTACAGGAACCTGTAACCAAAAAATCAGAACCTGCAACGAGAAAATCGTTAAATGAACCTAGTACTTCAAAAAAGCAGCCGGTACAAGAACCTCCTACTGCTGCACCTGCAACTGCACCTGCAGAAGCTTCAAAATTTGTCCCTGCGTCTGTGTCAGCACCTACAAAGGCAGCTAAATCGGCAAAAGCATCTCCAGCATATAAAAGAACAACAACAAAGAAAACTCCTCAAATAACAGAAATAAAATCACCAGCCGAAGAAAACGAAATGCTCCCACCTCAGCGGAGTACAGCAAATACGAGAAGAGGTCAACCACCCGTTGAGAAGGTTATACCAGTCAAAACCAAAAGATTGTTAACGCGTCCCAAAGTTCAAGAACCATGCAGCATAAGATGTTCGACAAGTATGGGATTAATACCAAGTTTACAATGTCGAGTTTGTCTCTGTTTATATCATCCTGAATGTGTCGACGGCATGGAATTTACAGGCAATGATGAATATGTTTGCAAGAATTGTCAACCGGATACTAAAGAATCTCACATGCCAAACAATCCGTCTTTAACACCACCTCCGTTGATTCCAATTAGTATGTTAGGTGCACAAAATGCGAAATCAAGACATCAGACTAATTCATCTCCACCGAAATTGCAAAGAATTCCAAAGTCCGAGGGTGCCGAAGCGCAAATAAGAAATTCTTCCAAAACTACCAAAATACCATCTTCAGTATCGAATTTGCCCTCAACTGTGGATAAAAAGGAAAGTACTTGGTTTCCTCAGACGGAGAATGAATTTCTACAAAGTCACGATGGCACTATGCCGAAACCGGCTCAAAATATCGCTGTAATGGGCGGCAAAAGATACATTGTAGTACCAAAAAATAACGCAATGGCAGTTCAACCGGCTATAACAGTAAAACCAGATAAAATTGGCGATAAACCGCCAATGCTTCAAGACGGTTTACTTACCGACATTTCGAATACTACAGATAATTCTGTAGCAAACTTATGTGCACCTCCACCTTTAAATACTGATTTACCTGAAAAAATAGATGTTACACCtgataaagaaattttaaaagatacgaTTCATCAGACGGATTTTACATCTTCTATTACTACTGAAATGACTGAAACATTTATGTATGATAATAAAGATAAGGATAGCAACAATACTACTAAAGGAGATCCTGTTGAAGATAATCTTATTGAAAATACATCAGAAAACGAATCTTTTACTGCCAATATAGATTATGTCtcagaaagagaaaaaacagaTACAAGTTGTAAATCACCTGAAAGTAAATCTGCATGTATATCAGTACATACGGCAAATATTACAAATACTCTTGAAGCAAGTGTGGAAACTGAAGCAATTAAAATAGATCAGCAACAATCATTACCAAGTAAAGTGGGTacagtaaaaaaaatgaaaaatagcaaGAGGAAGCAAAATCAACAGGAATTAGAGCAACAGCAAAATTTCATGAACTCAGTTTGCGCCGGTTATCATGCCCTGCTGCGTATTTTCCAATATCTTAAAGTCCAAGAATTATTGCGAGCCGCGCGAGTTTGTAAAATGTGGCGTGATCTCGCTGCACATCCATCTCTATGGAAGACTGTACGAATGAAGAACAGTCAAGTAACTGACTGGGATGGTTTGGCGGATACGTTGCAAAGACGTGGCACGCAGCATCTAGATCTCAGGAAAATGCTGGTTGCTGGCGAGTCCGACAACATCTGGAGGAAATTTCTGACTGTCATACCACGAGTAACCAGTCTCGTAAAGCTTGAACTATGCAGATGTCCCGTTATGGTTGTGGAAGAAGTTATTAAGAGTTGCCCACAGTTGGAGGTATTCAGTGCAATGTCGATCAAGTGCGACTCTCTCACATTAGAGTCGATCGGGAACTTGAGTCGATGTCAAGAACTCAGACTCAAAGCAATAACAGGAATGTCATTACAGCAAGATCTTACGCCTTTACAGGACTTAAAGCACTTGACACAGTTGAGTTTAACATCGGTTAAAGAACTTGGGAAGAAAAAAATTGACGTTATACAAGCGTTGACAAACTTGGAGACGTTAGAATTGGGCGAATGCTCCGACTTTCCTGACAAATTTGGAACTACCGTTTTAATCAACTTAAATAAATTGGAACGTCTTAGACTTGAAAAAGGTCAAGGATCTTGTTGTACATTTGATATCCTCGAAGGTGTATCAAAGTTGGAGAACTTGAGTCAGATGGAATTGGTTAATTTTGATGTGAAGAATGGCTTTGACAAATGTCTTGCTAATTGCAAAAACATCAAAAGGTTATTGATCATACCGACTTATATATCACAATCGGCGACATCCAATAACATGGTGCTCGGAGGTGTCACAGAATTGTCAGACAATTTGACGCATTTCATATGGGGCGTTACGCTCGAGTTACTCAGGGTCACAGAACTGTTCGTTGATCAGTGCAACCTTATGAGTAAACAGGTTACTGGGGATTCTATACCAGTTTTAAAACCTGTTCCCTGCTTAAGATTAATCGAGGATGTTGAGGATGAGAACGAGAACCAAAAAGgTGACGACAAGCAACAGCCTCATCTAACAAGCCCGCAAGTCGACATTTTACCGTTGCCACAATTGCAAAAGCTTCTTTTAACTGCGTTGCCCAAGACACGAGTTAAGATCTTAAAAATCCCTTTTCACGCCACGTGGCGGCAGAGCATTTCCGATACCACTACGCAGTAG
- Protein Sequence
- MDVANVNGGNAAVPREDSNLESGGGGGGGGASGPSGGTAVVSMVETQNSSDKAQLTAGGNADAQEVNGELRGTPRKHGTSLPRRRLRKFKANSMGTMEIDTADAPGTRGRKRKLSEYEDASSEDSEEFNGFDSQGLELQPGSHVLSKLIAEAEIAEAQVTKRVKYSTRSFDARERIDDNQDFDHMRTYVYETDSFEHLDMTNIKKEKESDKSETDSIDIPNSIDSEVEPNKIDITSIRSAYSSSAASSPSATSQKSKGSLISGGASPGGKHKTPVDMSNPLYKEPFKYGWKRELVFRASHDSSFKKMADIYYYTPKGKKVRSFREVAESLNSKELSMDNFTFFKEPIGLNDPEKEIIRDAKRSRGGSMGGSSIKKYNRKSVAIKKTVQEPVTKKSEPATRKSLNEPSTSKKQPVQEPPTAAPATAPAEASKFVPASVSAPTKAAKSAKASPAYKRTTTKKTPQITEIKSPAEENEMLPPQRSTANTRRGQPPVEKVIPVKTKRLLTRPKVQEPCSIRCSTSMGLIPSLQCRVCLCLYHPECVDGMEFTGNDEYVCKNCQPDTKESHMPNNPSLTPPPLIPISMLGAQNAKSRHQTNSSPPKLQRIPKSEGAEAQIRNSSKTTKIPSSVSNLPSTVDKKESTWFPQTENEFLQSHDGTMPKPAQNIAVMGGKRYIVVPKNNAMAVQPAITVKPDKIGDKPPMLQDGLLTDISNTTDNSVANLCAPPPLNTDLPEKIDVTPDKEILKDTIHQTDFTSSITTEMTETFMYDNKDKDSNNTTKGDPVEDNLIENTSENESFTANIDYVSEREKTDTSCKSPESKSACISVHTANITNTLEASVETEAIKIDQQQSLPSKVGTVKKMKNSKRKQNQQELEQQQNFMNSVCAGYHALLRIFQYLKVQELLRAARVCKMWRDLAAHPSLWKTVRMKNSQVTDWDGLADTLQRRGTQHLDLRKMLVAGESDNIWRKFLTVIPRVTSLVKLELCRCPVMVVEEVIKSCPQLEVFSAMSIKCDSLTLESIGNLSRCQELRLKAITGMSLQQDLTPLQDLKHLTQLSLTSVKELGKKKIDVIQALTNLETLELGECSDFPDKFGTTVLINLNKLERLRLEKGQGSCCTFDILEGVSKLENLSQMELVNFDVKNGFDKCLANCKNIKRLLIIPTYISQSATSNNMVLGGVTELSDNLTHFIWGVTLELLRVTELFVDQCNLMSKQVTGDSIPVLKPVPCLRLIEDVEDENENQKGDDKQQPHLTSPQVDILPLPQLQKLLLTALPKTRVKILKIPFHATWRQSISDTTTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01523359;
- 90% Identity
- iTF_00765583;
- 80% Identity
- -