Lbou022795.1
Basic Information
- Insect
- Leptopilina boulardi
- Gene Symbol
- -
- Assembly
- GCA_011634795.1
- Location
- PHTE01000488.1:12208-17924[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00085 0.091 13.7 0.2 1 20 66 85 66 87 0.94 2 13 2.7e-06 0.00029 21.5 1.4 1 23 171 194 171 194 0.95 3 13 0.00012 0.013 16.4 3.3 1 23 200 223 200 223 0.96 4 13 1.6e-05 0.0017 19.1 3.6 1 20 229 248 229 250 0.95 5 13 9e-08 9.6e-06 26.2 1.8 1 23 261 283 261 283 0.98 6 13 0.00014 0.015 16.2 0.7 2 23 293 314 292 314 0.98 7 13 0.00017 0.018 15.9 0.9 3 23 322 342 320 342 0.96 8 13 0.00067 0.072 14.0 1.7 4 23 359 378 348 378 0.82 9 13 1.9e-05 0.0021 18.8 3.0 1 23 384 406 384 406 0.95 10 13 1.9e-06 0.0002 22.0 1.4 1 23 412 435 412 435 0.95 11 13 6.9e-06 0.00074 20.2 0.5 1 23 441 463 441 463 0.96 12 13 1.7e-07 1.9e-05 25.3 3.3 1 23 469 491 469 491 0.98 13 13 6.6e-06 0.00071 20.3 0.9 2 23 498 520 497 520 0.95
Sequence Information
- Coding Sequence
- atgaatcaatcGATCGATGCTGTGAAAGTAgaagaaattctatcaaaaaccAGCTGCCTAATTAAAGAtgatacttTAACTTCCTGTGAAACAGTTAGTGAATCTTTAATAATTCCAGACACATTAGATACAGTTGAAGTTAACAAAGATGGatATTTCACACACAATGGACATCTTATTGAAATTGTTATGGATTATGAATGTGTCACGTGTCACAGAATCTTCCAAAATAAAGACTTGCTGACGGAGCATTTAGAAGTCTGCAGAGAGGAAGATGATGATACAAATCTTTTGGATTTGGGAAATCTCGATGAATATTATGAAACCGACGATGAAGAGGGCGATGACGCCGATGATGTCGATGATCCCAAATATTCACTTTCCGATGAAAAATCTTCCGattCAGATAGATTGaagaataataatgagaaGCCCGATATAAAACCAGTATCGGAAAATCAGTGTCATTGTTGTGgtgaagatttgaaaaatgctCACAGAGGCGGTCCACACAAATGTTCAGAGTGCGATCTTTCCTTTAAAAAAGCATCTTCCCTTCAACGACacacaattattattcattggGAGAATGAAAATCATACTTGCAATATTTGTGATGCAAGTTTTCGTGATAAAAAATCATTGGATAAACATAAATACACAACACACTCCACCAATAAAGTTTACAAatGCGAGCGttgtgataaatatttttcaagaagtTATCATTTGAATCGACATAAACTTCAATCCGGATGTCATGGAGAATTGCAAACTACATTTTCCTGTcaagtttgcAATAAAGAATTTACAAGAAAGGACAATTTACGTGAACATTTAAGATCACACGCGGGAAATCAGAaacgacaaaaaaaacaatgctCACAATGtccaaaagaattttacacaactcaacaattaataattcacgAGCGAATGCACACTGGTGAAAAGCCAATTAATTGTGATTTATGTGACAAATCATTTAATTCAACTCTCGCCATGAAGAAACATCGTCGCGTTCATACTGGAGAAAAACCATATGAGTGCAAATTTCATTCTGGATATACCGACAAAATCtgcaaaaAGAGATTTGCCGCTAGGGAAACATTAAATCGTCATCAGAGAATTCACACGGGAGAAAAACCGCACGTTTGTcagtattgcaaaaaatcatttatacaAGCGGCACAACTTCGAGCGCATATTTTCCATCACACGGGCGAAAATGGTTTTACTTGCGAGGATTGTGGAAAAACATTTAATCGTAAAGCGCGTCTTACTGTGCACAGAAAATTTGTTCACGAAGGCGTCACTCCATTTATGTGCGACGTTTGTAAACGGCCATTCACGAGAAAAGAGGATTTGGCCAAACACACTTTACTTCACACTGGACTTAAAcctCACAAGTGTACAAAATGTGAGAAATCGTTTGCGACAAAATCATCGTTGCAGGCACATTTAAATACTCATAGACGAGAACCGCCGCAATCGTGCGCAGAATGTGGAAGAGCTTTTATTCGTCAGGATTGTTTAATGAGACATATTCGTGCAAAACATCGAGATCTATTGGAAGATATTATGGGCGAGGCGGAAAAACGACATTTGCAATTGCAACTTTTCAATATTGCAACAACAGCTGctgaaaaacacaaaaaaggATCGTCAAGTACACTGAGCGCTGACCAATTATTAAAAGCAATTGTTGAACTCCTAACAATTCTAATAGAAGAGGAAACGTTACAAgtttttggaTGGCCGACTGAACCAGTTCAAGATATTCTCGAAGCAGTGATTCGAAGATGTGGACATGTACCAATTACTGGCGATAGTGATATTCCATTTGAGGAAAGACTGAGGGAAAatgttaaacttttatttactgtTGTTATTGAAGatcaaaatgtgaaaaaactTCTCACGATACAAACAGTCGATGAAGTAATTCTCCATGTTCTTAAACTCTCCAATGATTTAGCAAAATCCACTGAACAATCATTCGAATCgctatga
- Protein Sequence
- MNQSIDAVKVEEILSKTSCLIKDDTLTSCETVSESLIIPDTLDTVEVNKDGYFTHNGHLIEIVMDYECVTCHRIFQNKDLLTEHLEVCREEDDDTNLLDLGNLDEYYETDDEEGDDADDVDDPKYSLSDEKSSDSDRLKNNNEKPDIKPVSENQCHCCGEDLKNAHRGGPHKCSECDLSFKKASSLQRHTIIIHWENENHTCNICDASFRDKKSLDKHKYTTHSTNKVYKCERCDKYFSRSYHLNRHKLQSGCHGELQTTFSCQVCNKEFTRKDNLREHLRSHAGNQKRQKKQCSQCPKEFYTTQQLIIHERMHTGEKPINCDLCDKSFNSTLAMKKHRRVHTGEKPYECKFHSGYTDKICKKRFAARETLNRHQRIHTGEKPHVCQYCKKSFIQAAQLRAHIFHHTGENGFTCEDCGKTFNRKARLTVHRKFVHEGVTPFMCDVCKRPFTRKEDLAKHTLLHTGLKPHKCTKCEKSFATKSSLQAHLNTHRREPPQSCAECGRAFIRQDCLMRHIRAKHRDLLEDIMGEAEKRHLQLQLFNIATTAAEKHKKGSSSTLSADQLLKAIVELLTILIEEETLQVFGWPTEPVQDILEAVIRRCGHVPITGDSDIPFEERLRENVKLLFTVVIEDQNVKKLLTIQTVDEVILHVLKLSNDLAKSTEQSFESL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00882376; iTF_00880658; iTF_00881462; iTF_00883230; iTF_01391392; iTF_01389650; iTF_01392954; iTF_00461020;
- 90% Identity
- iTF_00883230; iTF_00882376; iTF_00880658; iTF_00881462;
- 80% Identity
- -