Basic Information

Insect: Synergus coniferae
Gene Symbol: su(Hw)
Assembly: GCA_032164275.1
Location: JAUEJJ010000032.1:1524364-1530979[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0019 0.24 12.6 0.2 1 20 63 82 63 84 0.94

2 13 1.2e-05 0.0015 19.5 0.5 1 23 162 185 162 185 0.93

3 13 8.4e-05 0.011 16.8 0.8 2 23 192 214 191 214 0.96

4 13 1.5e-05 0.0019 19.2 3.6 1 20 220 239 220 241 0.95

5 13 1.3e-08 1.6e-06 28.9 1.8 1 23 252 274 252 274 0.98

6 13 0.00045 0.056 14.5 2.3 2 23 284 305 283 305 0.98

7 13 0.0003 0.037 15.1 1.2 2 23 312 333 311 333 0.97

8 13 4e-06 0.0005 21.0 2.7 1 23 339 361 339 361 0.99

9 13 5.5e-06 0.00068 20.6 1.8 1 23 367 389 367 389 0.94

10 13 7.5e-06 0.00094 20.1 0.8 1 23 395 418 395 418 0.94

11 13 3.1e-06 0.00039 21.3 0.8 1 23 424 446 424 446 0.97

12 13 1.2e-07 1.5e-05 25.8 3.2 1 23 452 474 452 474 0.98

13 13 4.5e-05 0.0056 17.7 2.2 2 23 481 503 480 503 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0019	0.24	12.6	0.2	1	20	63	82	63	84	0.94
2	13	1.2e-05	0.0015	19.5	0.5	1	23	162	185	162	185	0.93
3	13	8.4e-05	0.011	16.8	0.8	2	23	192	214	191	214	0.96
4	13	1.5e-05	0.0019	19.2	3.6	1	20	220	239	220	241	0.95
5	13	1.3e-08	1.6e-06	28.9	1.8	1	23	252	274	252	274	0.98
6	13	0.00045	0.056	14.5	2.3	2	23	284	305	283	305	0.98
7	13	0.0003	0.037	15.1	1.2	2	23	312	333	311	333	0.97
8	13	4e-06	0.0005	21.0	2.7	1	23	339	361	339	361	0.99
9	13	5.5e-06	0.00068	20.6	1.8	1	23	367	389	367	389	0.94
10	13	7.5e-06	0.00094	20.1	0.8	1	23	395	418	395	418	0.94
11	13	3.1e-06	0.00039	21.3	0.8	1	23	424	446	424	446	0.97
12	13	1.2e-07	1.5e-05	25.8	3.2	1	23	452	474	452	474	0.98
13	13	4.5e-05	0.0056	17.7	2.2	2	23	481	503	480	503	0.95

Sequence Information

Coding Sequence: atgAGCGAATCAATCGgaattgtGAAAATAGAGGATATTCTTTCCACAAGCCACAATCAagatgCTTTACCATCTTGCGAAACAGTAAGCGAAACCCTGATAATTCCGGAGATGGTAGACACCGTCGAAGTTAACAAAGATGGATACTTTACACACAATGGGCACGTCATAGAAATCGTGATGGACTACGAATGTGTCACATGTCATCGCATCTTCCAGTCTAAGGAGATGCTGACGGAACATTTGGAAGTGTGCAGAGAAGAAGACGACAGTACAAACCTTTTGGATTTAGGAAACCTTGATAGTTATTATGATTCGGATGAAGAGGACGCTGATGATCCAAAATATCAACTTTCCGATACAAGATCTTCTGATTCAGAGGGATTGAAAAACAACAATGAGAAGCCGAATATAAAACCTGTATCGGAAAATCAGTGTCATTGCTGTGCCGAAGATTTGAAAACTGCACATAGCGGTGGTTCATTTAAGTGTGGCGAGTGTGAACTTTCCTTCAAAAAATCCTCATCTTTGCAAAGGCATTCGATTATCGTTCACTGGGAACGCGAAAATGTTACCTGTACCGAATGTGACGCTACTTTTCGAGACAAAAAAGCCTTGGATAAACACCGTTACACCACACACTCTACTACCAAAATTTACAAATGCGAACGttgtgataaatatttttcaagaagttACCACCTGAATCGGCATAAACTTCAATCTGGATGTCATGGAGAACTGCAAAACACGTTTTCCTGTCaggttTGCAACAAAGTCTTTACTCGCAAAGACAATTTACGAGAGCATTTACGAACTCACGCGGGAAAGCCGCAGAGACAAAAAAAGCAGTGTTCTCACTGCcccaaagaattttttacaaccCAGCAACTTGTCATTCACGAGCGAATGCACACAGGAGAAAAACCGATCCAGTGCGATTTGTGTACAAAATCTTTCAACTCGACGCTCGCAATGAAGAAGCACCGGCGAGTTCATACTGGCGAAAAACCCTACGAGTGCAAATTTTGCAAGAAGAGATTTGCTGCTAGAGAAACTCTAAATCGTCACCAGAGAACACACACGGGTGAAAAACCTCACGTTTGCCAATATTGTGGGAAATCCTTCATTCAAGCGGCGCAACTTCGAGCTCACGTTTTTCATCATACAGGAGAAAATGGATTTAATTGTGAGGATTGCGGAAAGGCTTTCAATCGAAAAGCTCGTCTCACTATTCACAGGAAATTTGTTCACGAAGGTGTCACTCCTTTCCAGTGCGAAGTCTGCGAAAAACAATTCACGAGAAAAGAGGATCTTGTGAAACATACTTTGCTTCATACCGGACTAAAAcctCACAAGTGCAACAAGTGCGAAAAATCTTTTGCGACGAAGTCCTCGCTTCAGGCTCATTTAAATACCCATAGAAGAGAACCACCCCAATCATGTGCAGAATGTGGGAGAGCCTTTATTCGTCATGATTGTTTAATGAGACACATTCGCGCTAAACATCGGGATTTGTTGGAGGACAGCATGGGCGAGGCAGAAAAACGACATTTGCAACTGCAGCTTTTCAATATCGCATCTACCGCAGCTGAAAAGCAAAAATCTGGATCTTCAAGCACTCTCAGTGTGGATCAGTTGCTTAAGTCAATCGTAGAACTTTTGAccattttaattgaagaagAATCGTTGCAGGTCTTTGGTTGGCCAAAAGAACCAGTTCAAGATATTCTCGAGGCGGTTATTAGAAGATGTGGTCATCAACCTTTAACTAGCGATAGTGATTTGCCTTTTGCGGAAAGACTGagagaaaatgtaaaacttcTCTTCACCGTCGTTATCCACGATACCAACGTCAAGTCCCTCCTGACGACGCAAACAGTCGATGAAGTCATCCTACACGTCCTCAAAATTTCCAAGGAAGCAGAATAA
Protein Sequence: MSESIGIVKIEDILSTSHNQDALPSCETVSETLIIPEMVDTVEVNKDGYFTHNGHVIEIVMDYECVTCHRIFQSKEMLTEHLEVCREEDDSTNLLDLGNLDSYYDSDEEDADDPKYQLSDTRSSDSEGLKNNNEKPNIKPVSENQCHCCAEDLKTAHSGGSFKCGECELSFKKSSSLQRHSIIVHWERENVTCTECDATFRDKKALDKHRYTTHSTTKIYKCERCDKYFSRSYHLNRHKLQSGCHGELQNTFSCQVCNKVFTRKDNLREHLRTHAGKPQRQKKQCSHCPKEFFTTQQLVIHERMHTGEKPIQCDLCTKSFNSTLAMKKHRRVHTGEKPYECKFCKKRFAARETLNRHQRTHTGEKPHVCQYCGKSFIQAAQLRAHVFHHTGENGFNCEDCGKAFNRKARLTIHRKFVHEGVTPFQCEVCEKQFTRKEDLVKHTLLHTGLKPHKCNKCEKSFATKSSLQAHLNTHRREPPQSCAECGRAFIRHDCLMRHIRAKHRDLLEDSMGEAEKRHLQLQLFNIASTAAEKQKSGSSSTLSVDQLLKSIVELLTILIEEESLQVFGWPKEPVQDILEAVIRRCGHQPLTSDSDLPFAERLRENVKLLFTVVIHDTNVKSLLTTQTVDEVILHVLKISKEAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00879916;
90% Identity: iTF_00461020;
80% Identity: -