Lcla014585.1
Basic Information
- Insect
- Leptopilina clavipes
- Gene Symbol
- -
- Assembly
- GCA_001855655.1
- Location
- JUFY01014167.1:7540-13586[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00095 0.098 13.7 0.2 1 20 66 85 66 87 0.94 2 13 2.1e-06 0.00022 22.0 1.4 1 23 179 202 179 202 0.95 3 13 0.00029 0.03 15.3 3.5 1 23 208 231 208 231 0.96 4 13 1.8e-05 0.0019 19.1 3.6 1 20 237 256 237 258 0.95 5 13 8.5e-07 8.8e-05 23.3 4.1 1 23 269 291 269 291 0.97 6 13 0.00015 0.016 16.2 0.7 2 23 301 322 300 322 0.98 7 13 0.00088 0.091 13.8 1.2 3 23 330 350 328 350 0.96 8 13 6.9e-06 0.00071 20.4 1.7 1 23 356 378 356 378 0.99 9 13 2.2e-05 0.0023 18.8 3.0 1 23 384 406 384 406 0.95 10 13 4.9e-06 0.0005 20.9 1.4 1 23 412 435 412 435 0.94 11 13 2.7e-05 0.0028 18.6 0.5 1 23 441 463 441 463 0.94 12 13 1.9e-07 2e-05 25.3 3.3 1 23 469 491 469 491 0.98 13 13 7.4e-06 0.00077 20.3 0.9 2 23 498 520 497 520 0.95
Sequence Information
- Coding Sequence
- ATGAGTCAATCGATTGATGTCGTGAAAGTAGAAGAAATTCTAACAAAAAGCAGCTGCCTAATTAAAGACGaTACTTTGACTTCCTGTGAAACAGTTAGTGAATCTTTAATAATTCCAGAATCGTTAGATACTGTTGAAGTTAACAAAGATGGATATTTCACACACAATGGACATCTTATTGAAATTGTTATGGATTACGAATGCGTCACGTGCCACAGAATCTTCCAAAATAAAGACttaTTGACGGAGCATTTAGAAGTCTGTAGAGAGGAAGATGATGACACGAATCTTTTGGATTTGGGAAATCTAGAAGAATATTATGAGTCCGACGAAGAGGATGATGATGacgacgatgatgatgatgatgatgatggcgAGGATGTCGACGATcctaaattttcactttccgACGATAAATCTTCCGatTCAGACAGATTGAAAAACAACAATGAGAAGCCGAATATAAAACCAGTGTCGGAAAATCAATGTCATTGTTGTGGTGAAGATTTGAAAAAAGCTCACAAAGGCGGTCCACACAAATGTAACGAATGCgatctttcatttaaaaaagcCTCTTCCCTTCAAAGACACACGATAATTATTCATTGGGAGAATGAAAATCACACCTGTAATGTGTGTGACGCCACATTTCGTGACAAAAAATCCTTGGATAAACACAAATACACGACACACGCAACAAATAAAGTTTACAAatGCGAGCGttgtgataaatatttttcaagaagtTATCATCTGAATCGACACAAACTCCAGTCCGGATGTCATGGACAATTGCAAAATACATTCTGTTGTCaaGTTTGCAACAAGGAATTCACAAGAAAGGACAATTTACGGGAGCATTTGCGTTCGCATATGGGAAATCAGAaacgacaaaaaaaacaatgctCACAATGTCCAAAGGAATTTTACACCActcaacaattaataattcacgAGCGAATGCACACGGGTGAGAAGCCAATTAATTGCGATTTGTGTACAAAATCGTTTAATTCAACTCTCGCGATGAAGAAACATCGTCGCGTTCACACTGGAGAAAAGCCATACGAATGCAAATTTtgCCAGAAGAGATTTGCTGCTAGGGAAACGTTAAATCGTCATCAGAGAATTCACACGGGTGAGAAGCCGCATGTATGTCAGTATTGCAAAAAATCTTTCATTCAGGCGGCACAACTTCGCGCGCATATTTTCCATCATACGGGCGAAAATGGTTTTAATTGCGAGGACTGTGGAAAGACGTTCAATCGAAAGGCGCGTCTCACTGTGCACAGGAAATTTGTTCATGAGGGCGTCACTCCATTTTTGTGCGACGTTTGCAAAAGGCCATTCACAAGAAAAGAAGATCTGGCGAAACACACTTTACTTCACACCGGACTTAAacctcACAAGTGCACAAAATGTGAGAAATCGTTTGCGACAAAATCGTCGCTGCAGGCGCATTTGAATACTCACAGACGAGAGCCACCACAATCGTGCGCTGAATGTGGGAGAGCTTTCATTCGTCAGGATTGTTTGATGAGACACATTCGCGCCAAGCATCGAGATCTATTGGAGGATATTATGGGCGAGGCGGAAAAACGTCACCTCcaattgcaattatttaatatcgcAAGCACAGCCGCCGAGAAACACAAGAAAGGATCATCGAGCAAACTCAGCGCTGATCAATTACTCAAGGCAATCGTTGAACTTTTAACGATTCTTATCGAAGAGGAAACGTTGCAGATTTTTGGATGGCCAACTGAACCAGTTCAAGATATTCTCGAAGCAGTGATTAGAAGATGTGGACATGTACCAATAACTGGCGACAGTGATTTACCATTCGATGAAAGATTGCGACAAAATGTTAAACTTCTATTCACCGTTGTTATCGAAgatcaaaatgtaaaaaaactcCTCACTTCACAAACCGTCGACGAGGTCATTCTTCATGTTCTCAAACTTTCCAACGATATAGCAAAAAATACCGAATCACCGTGA
- Protein Sequence
- MSQSIDVVKVEEILTKSSCLIKDDTLTSCETVSESLIIPESLDTVEVNKDGYFTHNGHLIEIVMDYECVTCHRIFQNKDLLTEHLEVCREEDDDTNLLDLGNLEEYYESDEEDDDDDDDDDDDDGEDVDDPKFSLSDDKSSDSDRLKNNNEKPNIKPVSENQCHCCGEDLKKAHKGGPHKCNECDLSFKKASSLQRHTIIIHWENENHTCNVCDATFRDKKSLDKHKYTTHATNKVYKCERCDKYFSRSYHLNRHKLQSGCHGQLQNTFCCQVCNKEFTRKDNLREHLRSHMGNQKRQKKQCSQCPKEFYTTQQLIIHERMHTGEKPINCDLCTKSFNSTLAMKKHRRVHTGEKPYECKFCQKRFAARETLNRHQRIHTGEKPHVCQYCKKSFIQAAQLRAHIFHHTGENGFNCEDCGKTFNRKARLTVHRKFVHEGVTPFLCDVCKRPFTRKEDLAKHTLLHTGLKPHKCTKCEKSFATKSSLQAHLNTHRREPPQSCAECGRAFIRQDCLMRHIRAKHRDLLEDIMGEAEKRHLQLQLFNIASTAAEKHKKGSSSKLSADQLLKAIVELLTILIEEETLQIFGWPTEPVQDILEAVIRRCGHVPITGDSDLPFDERLRQNVKLLFTVVIEDQNVKKLLTSQTVDEVILHVLKLSNDIAKNTESP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00879916;
- 90% Identity
- iTF_00879916;
- 80% Identity
- -