Ldro027160.1
Basic Information
- Insect
- Leptopilina drosophilae
- Gene Symbol
- -
- Assembly
- GCA_032873175.1
- Location
- CM065484.1:2242048-2251979[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00082 0.17 13.7 0.2 1 20 38 57 38 59 0.94 2 13 4.9e-06 0.00099 20.7 0.9 1 23 155 178 155 178 0.95 3 13 0.00025 0.051 15.3 3.5 1 23 184 207 184 207 0.96 4 13 1.5e-05 0.0031 19.2 3.6 1 20 213 232 213 234 0.95 5 13 7.4e-07 0.00015 23.3 4.1 1 23 245 267 245 267 0.97 6 13 4.1e-05 0.0084 17.8 0.8 2 23 277 298 276 298 0.97 7 13 0.00076 0.15 13.8 1.2 3 23 306 326 304 326 0.96 8 13 5.9e-06 0.0012 20.5 1.7 1 23 332 354 332 354 0.99 9 13 1.9e-05 0.0038 18.9 3.0 1 23 360 382 360 382 0.95 10 13 4.2e-06 0.00086 20.9 1.4 1 23 388 411 388 411 0.94 11 13 2.3e-05 0.0047 18.6 0.5 1 23 417 439 417 439 0.94 12 13 1.7e-07 3.4e-05 25.3 3.3 1 23 445 467 445 467 0.98 13 13 6.4e-06 0.0013 20.4 0.9 2 23 474 496 473 496 0.95
Sequence Information
- Coding Sequence
- ATGAGTCAATCGATCGaTGTCGTGAAAGTTGAGGAAATTCTAACGAAAACCAGTAGTCTTATTAGAGACGatTTTACACACAATGGACATCTCATTGAAATTGTTATGGACTACGAGTGTGTCACGTGCCACAGAATCTTCCAGAATAAAGACtTGCTGACGGAGCATTTAGAAGTCTGCAGAGAGGAGGACGATGATAGAAATATTTTGGATTTGGGAAATCTCGAGGAATATTACGAGTCGGACGAAGATGAAGGCGACGATGATGTTGATGATGACGAAGATGATGATGGCGACGAAGCCGATGATGTTGACGATCCTAAATATTCACTTTCCGATGATAAATCTTCTGaTTCAGATAGATTGAAGAATAACAATGAGAAGCCGAGTATAAAACCAGTGTCGGAAAATCAGTGTCATTGTTGCGGTGAGGATTTGAAAAAAGCCCACAAAGGCGGTCCACACAAATGTAACGAATGCGATCTCTCCTTTAAAAAAGCCGCTTCCCTTCAAAGACACACAATCATTATTCATTGGGAGAACGAAAATCACACTTGCAATGTTTGCGACGCCACATTTCGTGATAAAAAATCACTGGACAAACATAAATACACGACGCACGCTACCAATAAAGTTTACaaATGCGAGCgttgtgataaatatttttcaagaagttaTCATTTGAATCGACACAAACTCCAATCGGGATGTCACGGTCAATTGCAGAACACGTTCTGTTGTCAAGTTTGCAACAAGGAATTCACGAGAAAAGACAATTTACGTGAGCATTTGCGTTCGCACGCGGGAAATCAGACGCGACAAAAAAAGCGATGCTCCCAATGTCCAAAGGAATTTTACACCTCGCAACAATTGATAATTCACGAGCGAATGCACACGGGAGAGAAGCCAATAAATTGCGATCTATGtacaaaatcatttaattcaacGCTCGCAATGAAAAAGCATCGTCGCGTTCACACCGGAGAAAAGCCATACGAGTGCAAATTTtGCCAGAAGAGATTTGCCGCGAGGGAAACGTTAAATCGTCATCAGAGAATTCACACGGGCGAGAAGCCGCACGTCTGTCAGTATTGCAAAAAATCGTTTATCCAAGCGGCGCAATTGCGTGCCCATATATTCCATCACACGGGTGAAAATGGTTTTAATTGCGAGGACTGTGGAAAGACGTTCAATCGCAAGGCGCGTCTCACCGTTCATCGAAAATTTGTCCACGAGGGCGTCACTCCATTTTTATGCGACGTCTGCAAGAGACCATTCACTCGCAAGGAGGATCTCGCAAAACACACTCTACTTCACACCGGACTTAAACcGCACAAGTGTACAAAGTGTGAGAAATCGTTCGCGACAAAGTCGTCGTTGCAGGCGCACTTGAATACTCATAGACGGGAACCGCCGCAATCGTGCGCCGAATGCGGCAGAGCATTCATTCGTCAGGATTGTTTAATGAGACATATTCGCGCCAAGCATCGCGATTTATTGGAGGACATAATGGGCGAGGCGGAGAAGCGTCACTTGCAACTGCAACTTTTCAATATCGCAAACACGGCTGCCGAGAAGCATAAAAAAGGCTCGTCAAGCACACTCAGCGCCGATCAACTCCTAAAGGCAATTGTCGATCTTCTAACGATTCTCATCGAAGAGGAAACGTTGCAgGTTTTTGGCTGGCCTACTGAACCGGTGCAAGATATTCTGGAGGCAGTGATCAGAAGATGTGGACACGTGCCAGTTACGGGCGACAGTGATTTGCCCTTTGAGGAAAGATTGAGGGCAAATGTTAAACTTTTATTCACCGTTGTTATTGAAGATCAAAATGTGAAGAAACTCCTCACTATACAAACAGTCGACGAGGTTATACTCCATGTTCTGAAACTCTCCAAGGATTTAGCAAATTCTACCGAACAATCTATCGAAACACTgtga
- Protein Sequence
- MSQSIDVVKVEEILTKTSSLIRDDFTHNGHLIEIVMDYECVTCHRIFQNKDLLTEHLEVCREEDDDRNILDLGNLEEYYESDEDEGDDDVDDDEDDDGDEADDVDDPKYSLSDDKSSDSDRLKNNNEKPSIKPVSENQCHCCGEDLKKAHKGGPHKCNECDLSFKKAASLQRHTIIIHWENENHTCNVCDATFRDKKSLDKHKYTTHATNKVYKCERCDKYFSRSYHLNRHKLQSGCHGQLQNTFCCQVCNKEFTRKDNLREHLRSHAGNQTRQKKRCSQCPKEFYTSQQLIIHERMHTGEKPINCDLCTKSFNSTLAMKKHRRVHTGEKPYECKFCQKRFAARETLNRHQRIHTGEKPHVCQYCKKSFIQAAQLRAHIFHHTGENGFNCEDCGKTFNRKARLTVHRKFVHEGVTPFLCDVCKRPFTRKEDLAKHTLLHTGLKPHKCTKCEKSFATKSSLQAHLNTHRREPPQSCAECGRAFIRQDCLMRHIRAKHRDLLEDIMGEAEKRHLQLQLFNIANTAAEKHKKGSSSTLSADQLLKAIVDLLTILIEEETLQVFGWPTEPVQDILEAVIRRCGHVPVTGDSDLPFEERLRANVKLLFTVVIEDQNVKKLLTIQTVDEVILHVLKLSKDLANSTEQSIETL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00879916;
- 90% Identity
- iTF_00879916;
- 80% Identity
- -