Lsin036357.1
Basic Information
- Insect
- Leptidea sinapis
- Gene Symbol
- retn
- Assembly
- GCA_905404315.1
- Location
- FR990199.1:6903288-6911418[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-20 1.2e-16 62.0 0.0 15 89 11 83 7 83 0.95 2 2 5.4 2.2e+04 -2.9 0.0 25 38 211 224 176 225 0.61
Sequence Information
- Coding Sequence
- ATGATTTTAGCGCCAATATTCACAGATGATAcaaatgGCACACCAATAAACCGACTGCCTATAATGGCGAAGTCAGTACTGGATCTCTACGAGTTGTACAACTTGGTGATTGCCCGAGGGGGTCTGGTGGAGGTCATCAACAAGAAGCTCTGGCAGGAAATTATAAAGGGTCTCCGGCTGCCATCCTCCATCACTTCGGCTGCATTCACACTCAGAACACAGTATATGAAATACTTATACGACTACGAGTGCGAGAAGAAGAACTTGTCGACGCGGAGTGAGCTGGACGCCGCCATAGAGGGCAATAAGCGAGAGGGCCGGCGTGCTTCCGGGCAGTACGATGCGCAGGCGGCTCTTTCTATGCCCCCCTTGAACCGTGGAGTGCCCGCGTCTCTGGCGCAGCTGTCCCAGCACATGCAGCCGCTGTCCCTGTCGCTGGGGGGCGCGGTAGGGGGCGTCCCCCGCCTGCCCCCACTGCCGCCGCACGCGCCTCACATCACGCAGCATGACATAGAGTACCGCGTGCGGGAGTACATGAAGATGATCCAGCAGCAACGGGAACTAATCAGAAATGGTTCGGAGTCACCGCCTGGCGCTCCCATGGTGTCCCCGCGGGACGCCGCCCTGTCTGCTATCGACGTGTCCCGTCTGACTCTGTGGTCTCTCTACAACAATAACAACAATACCTGCCCACAGCCAGACCTCGAGCCACAACGAGAGGCGCTAAATTTAAGTGAGAGCCCCAACTCAAGTAACGGTATCAAGCGCGAGGCGTGTCGCTCCCCCCCTCCGCCCGCTAAACGCCGCACCCCCCGCCCGCCCTCGCCCCCTCGCTCGCCCCCGGACACTAAGCCCGCCGTACACGCAGCGCATCTGAACGGCAACGCGAACGGAATCAGTGGAGCCGCCTTCAAAATATCCACGAgagGTGACGCGAGCACGGGTGATCAGAAATTAGTTGTATCAATAGAACTGAATGGAGTTACCTACGAAGGCGTCCTGTTCCCCTCACAAACCGGAAATGGACAGAATAACCATCGGCAAATGGTCTCTTAA
- Protein Sequence
- MILAPIFTDDTNGTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYDYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAQAALSMPPLNRGVPASLAQLSQHMQPLSLSLGGAVGGVPRLPPLPPHAPHITQHDIEYRVREYMKMIQQQRELIRNGSESPPGAPMVSPRDAALSAIDVSRLTLWSLYNNNNNTCPQPDLEPQREALNLSESPNSSNGIKREACRSPPPPAKRRTPRPPSPPRSPPDTKPAVHAAHLNGNANGISGAAFKISTRGDASTGDQKLVVSIELNGVTYEGVLFPSQTGNGQNNHRQMVS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00723754;
- 90% Identity
- iTF_00874235;
- 80% Identity
- iTF_00875087;