Lrea001475.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptidea reali
Gene Symbol
-
Assembly
GCA_949711725.1
Location
CATIXN010000001.1:28778748-28808116[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 2.2e-05 0.0027 19.2 2.1 1 23 188 210 188 210 0.99
2 30 0.00051 0.064 14.8 0.3 3 20 257 274 255 276 0.92
3 30 9.7e-05 0.012 17.1 0.5 3 23 303 324 301 324 0.96
4 30 2.1 2.7e+02 3.4 0.3 2 21 345 364 344 365 0.86
5 30 0.34 43 5.9 0.8 1 23 375 397 375 397 0.95
6 30 0.24 30 6.4 0.2 2 23 415 436 414 436 0.96
7 30 2.8e-05 0.0034 18.8 0.8 2 23 474 496 473 496 0.96
8 30 0.0011 0.14 13.7 3.8 2 23 541 563 541 563 0.97
9 30 8.9e-05 0.011 17.2 1.8 1 23 613 636 613 636 0.98
10 30 0.0011 0.14 13.8 0.5 1 23 689 711 689 711 0.98
11 30 0.0068 0.85 11.3 6.2 1 23 722 744 722 744 0.98
12 30 0.079 9.9 7.9 1.8 2 23 756 777 755 777 0.96
13 30 0.0047 0.59 11.8 0.7 1 23 787 809 787 809 0.98
14 30 0.014 1.8 10.3 4.7 1 23 838 860 838 860 0.96
15 30 0.0035 0.44 12.2 0.7 1 23 871 893 871 893 0.94
16 30 6.8e-05 0.0086 17.6 0.3 1 23 901 923 901 923 0.97
17 30 0.00012 0.015 16.8 0.3 2 23 943 965 942 965 0.97
18 30 1.2 1.5e+02 4.2 1.0 1 23 983 1005 983 1005 0.91
19 30 0.095 12 7.7 3.7 1 23 1012 1034 1012 1034 0.97
20 30 0.0045 0.56 11.9 4.0 2 23 1045 1067 1044 1067 0.95
21 30 0.0004 0.05 15.2 0.7 2 23 1090 1111 1089 1111 0.95
22 30 7 8.7e+02 1.8 4.0 2 23 1154 1176 1153 1176 0.94
23 30 0.0011 0.14 13.8 0.3 2 23 1192 1213 1191 1213 0.95
24 30 0.11 14 7.5 2.6 5 23 1223 1241 1220 1241 0.94
25 30 0.003 0.38 12.4 1.0 2 23 1252 1274 1251 1274 0.95
26 30 0.018 2.3 10.0 1.8 2 23 1291 1309 1291 1309 0.96
27 30 4.7 5.8e+02 2.4 3.9 2 21 1313 1332 1313 1333 0.92
28 30 0.43 54 5.6 1.0 2 23 1381 1402 1380 1402 0.93
29 30 0.028 3.5 9.4 0.5 2 23 1413 1435 1412 1435 0.94
30 30 0.32 40 6.0 3.3 2 20 1473 1491 1472 1493 0.94

Sequence Information

Coding Sequence
ATGGCACTCAAGCTTGGAAAATGTAGGCTTTGCCTTAAGCTTGGTGATTTCTATTCAATCTTTACGGTGGACAATAACTTGCAACTTGCAGAAATGGTTATGGAATGCGCCCGTGTTAAAATACAAGACGGTGATGGATTACCAGACAAAATATGTTCTGAGTGTATTCAAAAGTTGAGCAGTGCTCACATATTCAAACAGCAATGTGAACGCTCTGATCAAGAACTCCGACGTAACTATGTCCCACCACCAGGCTTCACTTCTCCCTCGGAACAAAATAGACAAAGCAGTGATTCCGCGTTTTCAACACAAACAGATAGCTCAAAACCATCCTCGAGTCAAGTCACCCCTATAAGCAGAACTAGAAAGAGAAGTTCAGAAAGTATTGATAATGCTTCGAGTAGCGGCGTATCTCATGACTATAATCCAAAGACCACGAAGCGTGTTGAAGAATTGCGGCAATCTCAAAAAAGAGCAAAACTTAAAACTAATTCTGATTCTGACTATGAATATAGCGGATCAGTTTATTCAGGGGGGACTGATTCAGATGAGCCTATAGAATACAAATGCGATATATGCTCGAAAGTTTTCAACAAATATCAAAGTTTAAATGCCCATAAGAAGACACATAAGCGTAGTAGTGATTCGGGTATGTCGCCGCAGCCCTCGAGAAAATCTCTTACTGCCCCGTCCCCTATTCCCGTGTTGTCTACCTCATCTGATTATCTTGAGGCCAAAGATGCTAATGATTGTGAGGACAAAATTAATTGTGAAAAGTGTGGCAAGTCATTTAAGTTAAAAATCATGTTGAAACGACACAAGGAAGTCTGTGGAAAACTTATTGACAAAGAGCTGAAAATATCACTTGAACCGATCGATTCAACGCCAAAACAAAATGCTATTGACTGCAAAATGTGCacaacaaaattcaaaacagTGGCTACTCTCGAAAAACACATGAGAGTCGTACATGCAGCAGTCCTTAAAGGTGAATCCGATGTGAAAGTTTCGGCAGATGGTAAACCAATTGTGCCCTGTTTCTACTGTAATAAACCATATGATGATTATTATTCTCATACAGCACATTTCAGAGTTTGTCCAAAAAGGGATGATTCATTGTCCTTTACGTGTACTGTATGTGGTAAATATTTGCTCAAGAAAGCAAGTTATTATGTTCACATTAAAGAACATTTTCATCCTTCCAAAGACTTAAATCCATCTGCTGATTCTCCCCGAACTCTCAAATGTCGTTTCTGTAAAGCCAAGTTGGCATCACAGGAATTGCTAATATCACATTTAGCTTCACACATGGACGATGAAAATGATTTTGAAGATGTAGAATCTCGAAACAGTACTATAGAAGATTCAGGGTCTGTACATTCAGATTACAATAATTCAAAGGTCTCTACAGGACCTCTAAAATGTCCCTATTGTGATGCTCGTTTCAAATATAAGAAAGCACTAGAAACACATCAAATCACCAAACATTCTGTAGACCCAAAAAATGTAAGCATTAAATCCGAACCTCCCGATTTAAAGGAATCTCCGGACCATTTGGGTGAACCTTTGAATGATGAGCAATATGACAGTGATTCTAGTCAAGGCGACGATAATGATAACACTTGCGATATATGCGAACGACAATTCTCTTATAAACGTCTGCTGATTCATCACAAGCGTACAAAACACAATATATCGTCGGGAACGAAAAGGGCAAAGATAACACTGAAGGATTGTTTGGTTCGGTGTCTTATTTGCGATCTGGAGATGAAAGTGAGCGCGATCAATGAGCACAACCAAAAACACATTACGGCCAACATAAAGCCTCGTAATTTGTATACGTGTACAGAATGTAAGCAACAGTTCAAGAGCTGCAGCGGCCTTGctaatcatattaaaatagtgCATAGGTTACAACTTAAGCCGCAAGCGCCGCAAGTTAGCGATGCAACACCGGATTTGGCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAGCCCCTGGAAATCCAGAGTCACAACGGCTTTCAAGAGGGATCCGCACCATCTGTCAACATGAGCGGCTTTACATGCCCCACGTGCAACAAACAAATGCCTACTCTTATTTCCCTTAAGAGACACATGAATTGGCACACCAATGTTGGAGGGAAAATTGAAAAACAGTACGAGTGTTTTGTCTGTAACgagATATTCCGATTCCAGTGCCACTATAAAATGCACATGCGTGAACATTATCATGACACAAATTTAGACCCAAAGTATTTGACCTGTTCAATCTGCAACAGGAAGAGTAAACATCTTCGCGCTGCGCAAGCACACATGAACTTCCACAAACAAACTCGCTTCAAAAATAAAGATTATGAATGCTCAATATGCAAAAGAGTATTTCAATATAGAAAGGTTTACCTATCCCATATGGCCATTCATTACAAACGTGGTGAAAGTACAAACAATACTGTTGTCGGTTCTGTGTTACCTAACACAGCTGATATGACAGTATTCGACGGTACACATACTTGTCAATTGTGTGGAAAAGTTTGTCAGTCAGAGAATTCTCTCAAACATCACTTGATCTGGCACAAATCAAAGACTTCTCTTTACGGATCTAGATATGAGTGTGAGATATGCAATTTGCAGTTCACTAACAAGAAGCGTTTGGAGATTCATGATAGATCACACTATGAAGATGACAATGGTCCATTTAAATGTAACATATGTGGCAAGGGTTACATTGCTGAGAGTTACTTAAGGAAGCATGTCAAGGGTCACAACTTTGATCACCAATCCCATAAAAAACGAATCGAAAAATTGAGGAAAGATAAAGTAAAATGCCCCATTTGTACCAAATTTTATCCGGACTTGGTGAAACTGATTCGGCACTTGCGAAGAACTCATCCTGAGAGCAAAATGATAAAAGAAGACCCAGATGCGCCGCAACAGCCATATTTTTCTTGTAAACTTTGTGCAAAAGTCTTTTTGGATGAGCGAAGGCTACAACATCACGAAGAAGCTCATCTTCGCAAACCAGAATTCTTTAAGTGTAAATTCTGCGGCAAGAAAACGATTTCCTTGAAAAATCACAGAGTACATATTAAAGGACATCTCACACAGAAGTATATTGATGAGCCCCTTAAGTGTGCACATTGTGAGGAAACATTTACGAGAGGCTATGACTTACACCACCATTTACGAGATGTACACAATATTAATGAAACATGGATAGCAGACAGAAATAATGAACATTTAGATGGACCCTTGAAAGATCTTCAGTGTTCCATCTGTCACAAAGTGTTAGCCAGCCAAGGGAACTATGAGAGACATTTAGACTACCATAATTCTCTTCGCTGCAATTATTGTTATGATAACTTCAGTTCTTTAAGGTTTTTGGATGGTCATTTGGCATTTAGCTGTGATAAGAAAAAATTGATTGGGGATACTGAAATCTATCCccgaaaaataaaatgtaaaatgtgttACAAACCATTCCATCTACAAGTTAAACTGGATTGTCATTTACGCACAGTGCACGGAATTAAGTCTTTCAAACAGGCTTCATATAGAAAGAGAGAGATTGTGTGTGATTATTGTTTTAGAGTTTTCGAAAATGAAGATTCCTTAACAAGCCATAAACTTTATCACAGAACTATAGGGTATTATGGGTGCATTTATTGtcctaaaaaatttaatactctCACGGCATACAGAAAACACAAAAACCATCATTTTGCTCAACTTAATGTAGACAATCCTACAAAGTGCGAACATTGTGACGAAACCTTTGTTCCATTCAGGGAATTCATTTACCACATGAGAGATGTTCATCAGGATGATAAGGAATGGGTTGTGATGCCAAAGGAGGTGATTGAAGAGAAGTGCAACATATGCAACAAAATATTCTATAATCTTCAAAGACACCTTATGTACCATGAGGAAAACAGATGCAAAAAGTGTGGGGAATACTTCTTTTCGCATATCGATTATGATAACCACATCTGCCATATTGACAGCGAAGATGAAGTCCAAGAAAACGACGATACCGACATACGACCTAAATACGAAGAGTGTAGATTTTGTTTCAAACAACTCACATATAAAACTCAAAAAGTGCACGACATACTTCACAAGGGGTCAGGCTCTATATCCTGTCGCTTCTGTACTCTCAAATTTAAGACCATGGATGCTTTTAACATTCACGCCTTTTCTCACAGAAGCAGAAAGTACAAAAAGAGGCCTATAAAGTGTAGACTTTGCCCAGAGAAGTTTGTGAAATACGGACCTTTCATGCGACACATGAAATTCGTTCACAAGTCTACCAAAAAGGTTCATTACAGAGCCACTGTTAAACCGGAGAAGTGTGTGGTGTGTGGGGATCTGTTCCCCAATTTGCACAACCACTACAGGGCTCATTTACAGAATCAGTGTCAGCAAtgtcttaaatattttacttccTCGAAATTGTTCACAAAACATGAGTGCGACAAAGAGGACTCAGACCCTTCGAAAGTTTTTACTTGTGATGCGGATCTTATACACTTGATTAACACTTTCGTTCCCACGGACGAGAAAGATGACGAAAAGTTCTACGGTTATGATGAAGAGGATGATATTGACGAAGGACAAAACAATGAGCTTCCTGATAATGACGACAGTCAAAACTCAGCAGACACAGCTGAGGATAAAATACATGAAATGGTTCACGCGCCTATCATTTCTGACGTATTATCGCTTTACAAAAGCAAAGATGTTgacaatttaaaacaaacaacaatGGGTGATCCAAATGTcatagatcttgtagatgatgATTCCATTGGTTTCGAAAGTGCTCCCATTCCAGTAATTACTATTGATTGTGATGATTCACAATGA
Protein Sequence
MALKLGKCRLCLKLGDFYSIFTVDNNLQLAEMVMECARVKIQDGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFTSPSEQNRQSSDSAFSTQTDSSKPSSSQVTPISRTRKRSSESIDNASSSGVSHDYNPKTTKRVEELRQSQKRAKLKTNSDSDYEYSGSVYSGGTDSDEPIEYKCDICSKVFNKYQSLNAHKKTHKRSSDSGMSPQPSRKSLTAPSPIPVLSTSSDYLEAKDANDCEDKINCEKCGKSFKLKIMLKRHKEVCGKLIDKELKISLEPIDSTPKQNAIDCKMCTTKFKTVATLEKHMRVVHAAVLKGESDVKVSADGKPIVPCFYCNKPYDDYYSHTAHFRVCPKRDDSLSFTCTVCGKYLLKKASYYVHIKEHFHPSKDLNPSADSPRTLKCRFCKAKLASQELLISHLASHMDDENDFEDVESRNSTIEDSGSVHSDYNNSKVSTGPLKCPYCDARFKYKKALETHQITKHSVDPKNVSIKSEPPDLKESPDHLGEPLNDEQYDSDSSQGDDNDNTCDICERQFSYKRLLIHHKRTKHNISSGTKRAKITLKDCLVRCLICDLEMKVSAINEHNQKHITANIKPRNLYTCTECKQQFKSCSGLANHIKIVHRLQLKPQAPQVSDATPDLADFCEVVVTKAEPLEIQSHNGFQEGSAPSVNMSGFTCPTCNKQMPTLISLKRHMNWHTNVGGKIEKQYECFVCNEIFRFQCHYKMHMREHYHDTNLDPKYLTCSICNRKSKHLRAAQAHMNFHKQTRFKNKDYECSICKRVFQYRKVYLSHMAIHYKRGESTNNTVVGSVLPNTADMTVFDGTHTCQLCGKVCQSENSLKHHLIWHKSKTSLYGSRYECEICNLQFTNKKRLEIHDRSHYEDDNGPFKCNICGKGYIAESYLRKHVKGHNFDHQSHKKRIEKLRKDKVKCPICTKFYPDLVKLIRHLRRTHPESKMIKEDPDAPQQPYFSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRVHIKGHLTQKYIDEPLKCAHCEETFTRGYDLHHHLRDVHNINETWIADRNNEHLDGPLKDLQCSICHKVLASQGNYERHLDYHNSLRCNYCYDNFSSLRFLDGHLAFSCDKKKLIGDTEIYPRKIKCKMCYKPFHLQVKLDCHLRTVHGIKSFKQASYRKREIVCDYCFRVFENEDSLTSHKLYHRTIGYYGCIYCPKKFNTLTAYRKHKNHHFAQLNVDNPTKCEHCDETFVPFREFIYHMRDVHQDDKEWVVMPKEVIEEKCNICNKIFYNLQRHLMYHEENRCKKCGEYFFSHIDYDNHICHIDSEDEVQENDDTDIRPKYEECRFCFKQLTYKTQKVHDILHKGSGSISCRFCTLKFKTMDAFNIHAFSHRSRKYKKRPIKCRLCPEKFVKYGPFMRHMKFVHKSTKKVHYRATVKPEKCVVCGDLFPNLHNHYRAHLQNQCQQCLKYFTSSKLFTKHECDKEDSDPSKVFTCDADLIHLINTFVPTDEKDDEKFYGYDEEDDIDEGQNNELPDNDDSQNSADTAEDKIHEMVHAPIISDVLSLYKSKDVDNLKQTTMGDPNVIDLVDDDSIGFESAPIPVITIDCDDSQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00874681; iTF_00876415; iTF_00875566;
90% Identity
iTF_00875566;
80% Identity
-