Lsin005495.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Leptidea sinapis
Gene Symbol
-
Assembly
GCA_905404315.1
Location
FR990156.1:5549260-5555984[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 30 2e-05 0.0027 19.2 2.1 1 23 151 173 151 173 0.99
2 30 0.00048 0.064 14.9 0.3 3 20 220 237 218 239 0.92
3 30 9e-05 0.012 17.1 0.5 3 23 266 287 264 287 0.96
4 30 2 2.7e+02 3.5 0.3 2 21 308 327 307 328 0.86
5 30 0.32 43 6.0 0.8 1 23 338 360 338 360 0.95
6 30 0.22 30 6.5 0.2 2 23 378 399 377 399 0.96
7 30 2.5e-05 0.0034 18.9 0.8 2 23 437 459 436 459 0.96
8 30 0.0011 0.14 13.8 3.8 2 23 504 526 504 526 0.97
9 30 8.2e-05 0.011 17.3 1.8 1 23 576 599 576 599 0.98
10 30 0.001 0.14 13.8 0.5 1 23 652 674 652 674 0.98
11 30 0.0063 0.85 11.3 6.2 1 23 685 707 685 707 0.98
12 30 0.073 9.9 8.0 1.8 2 23 719 740 718 740 0.96
13 30 0.0044 0.59 11.8 0.7 1 23 750 772 750 772 0.98
14 30 0.013 1.8 10.3 4.7 1 23 801 823 801 823 0.96
15 30 0.0033 0.44 12.2 0.7 1 23 834 856 834 856 0.94
16 30 6.3e-05 0.0086 17.6 0.3 1 23 864 886 864 886 0.97
17 30 0.00011 0.015 16.9 0.3 2 23 906 928 905 928 0.97
18 30 1.1 1.5e+02 4.2 1.0 1 23 946 968 946 968 0.91
19 30 0.088 12 7.7 3.7 1 23 975 997 975 997 0.97
20 30 0.0042 0.56 11.9 4.0 2 23 1008 1030 1007 1030 0.95
21 30 0.00037 0.049 15.2 0.7 2 23 1053 1074 1052 1074 0.95
22 30 6.4 8.7e+02 1.9 4.0 2 23 1117 1139 1116 1139 0.94
23 30 0.001 0.14 13.8 0.3 2 23 1155 1176 1154 1176 0.95
24 30 0.1 14 7.5 2.6 5 23 1186 1204 1183 1204 0.94
25 30 0.0028 0.38 12.4 1.0 2 23 1215 1237 1214 1237 0.95
26 30 0.017 2.3 10.0 1.8 2 23 1254 1272 1254 1272 0.96
27 30 4.3 5.8e+02 2.4 3.9 2 21 1276 1295 1276 1296 0.92
28 30 0.4 54 5.7 1.0 2 23 1344 1365 1343 1365 0.93
29 30 0.026 3.5 9.4 0.5 2 23 1376 1398 1375 1398 0.94
30 30 0.29 40 6.1 3.3 2 20 1436 1454 1435 1456 0.94

Sequence Information

Coding Sequence
ATGCAAGCGATACAAGACGGTGATGGATTACCAGACAAAATATGTTCTGAGTGTATTCAAAAGTTGAGCAGTGCTCACATATTCAAACAGCAATGTGAACGCTCTGATCAAGAACTCCGACGTAACTATGTCCCACCACCAGGCTTCACTTCTCCCTCGGAACAAAATAGACAAAGCAGTGATTCCGCGTTTTCAACACAAACAGATAGCTCAAAACCATCCTCGAGTCAAGTCACCCCTATAAGCAGAACTAGAAAGAGAAGTTCAGAAAGTATTGATAATGCTTCGAGTAGCGGCGTATCTCATGACTATAATCCAAAGACCACGAAGCGTGTTGAAGAATTGCGGCAATCTCAAAAAAGAGCAAAACTTAAAACTAATTCTGATTCTGACTATGAATATAGCGGATCAGTTTATTCAGGGGGGACTGATTCAGATGAGCCTATAGAATACAAATGCGATATATGCTCGAAAGTTTTCAACAAATATCAAAGTTTAAATGCCCATAAGAAGACACATAAGCGTAGTAGTGATTCGGGTATGTCGCCGCAGCCCTCGAGAAAATCTCTTACTGCCCCGTCCCCTATTCCCGTGTTGTCTACCTCATCTGATTATCTTGAGGCCAAAGATGCTAATGATTGTGAGGACAAAATTAATTGTGAAAAGTGTGGCAAGtcatttaagttaaaaattatgttgaaaCGACACAAGGAAGTCTGTGGAAAACTTATTGACAAAGAGCTGAAAATATCACTTGAACCGATCGATTCAACGCCAAAACAAAATGCTATTGACTGCAAAATGTGCACAACAAAATTCAAAACAGTGGCTACTCTCGAAAAACACATGAGAGTCGTACATGCAGCAGTCCTTAAACGTGAATCCGATGTGAAAGTTTCGGCAGATGGTAAACCAATTGTGCCCTGTTTCTACTGTAATAAACCATATGATGATTATTATTCTCATACAGCACATTTCAGAGTTTGTCCAAAAAGGGATGATTCATTGTCCTTTACGTGTACTGTATGTGGTAAATATTTGCTCAAAAAAGCAAGTTATTATGTTCACATTAAAGAACATTTTCATCCTTCCAAAGACTTAAATCCATCTGCTGATTCTCCCCGAACTCTCAAATGTCGTTTCTGTAAAGCCAAGTTGGCATCACAGGAATTGCTAATATCACATTTAGCTTCACACATGGACGATGAAAATGATTTTGAAGATGTAGAATCTCGAAACAGTACTATAGAAGATTCAGGGTCTGTACATTCAGATTACAATAATTCAAAGGTCTCTACAGGACCTCTAAAATGTCCCTATTGTGATGCTCGTTTCAAATATAAGAAAGCACTAGAAACACATCAAATCACCAAACATTCTGTAGACCCAAAAAATGTAAGCATTAAATCCGAACCTCCCGATTTAAAGGAATCTCCGGACCATTTGGGTGAACCTTTGAATGATGAGCAATATGACAGTGATTCTAGTCAAGGCGACGATAATGATAACACTTGCGATATATGCGAACGACAATTCTCTTATAAACGTCTGCTGATTCATCACAAGCGTACAAAACACAATATATCGTCGGGAACGAAAAGGGCAAAGATAACACTGAAGGATTGTTTGGTTCGGTGTCTTATTTGCGATCTGGAGATGAAAGTGAGCGCGATCAATGAGCACAACCAAAAACACATTACGGCCAACATAAAGCCTCGTAATTTGTATACGTGTACAGAATGTAAGCAACAGTTCAAGAGCTGCAGCGGCCTTGCtaatcatattaaaatagtGCATAGGTTACAACTTAAGCCGCAAGCGCCGCAAGTTAGCGATGCAACACCGGATTTGGCGGATTTTTGTGAAGTCGTTGTGACAAAGGCGGAGCCCCTGGAAATCCAGAGTCACAACGGCTTTCAAGAGGGATCCGCACCATCTGTCAACATGAGCGGCTTTACATGCCCCACGTGCAACAAACAAATGCCTACTCTTATTTCCCTTAAGAGACACATGAATTGGCACACCAATGTTGGAGGGAAAATTGAAAAACAGTACGAGTGTTTTGTCTGTAACgagATATTCCGATTCCAGTGCCACTATAAAATGCACATGCGTGAACATTATCATGACACAAATTTAGACCCAAAGTATTTGACCTGTTCAATCTGCAACAGGAAGAGTAAACATCTTCGCGCTGCGCAAGCACACATGAACTTCCACAAACAAACTCGCTTCAAAAATAAAGATTATGAATGCTCAATATGCAAAAGAGTATTTCAATATAGAAAGGTTTACCTATCCCATATGGCCATTCATTACAAACGTGGTGAAAGTACAAACAATACTGTTGTCGGTTCTGTGTTACCTAACACAGCTGATATGACAGTATTCGACGGTACACATACTTGTCAATTGTGTGGAAAAGTTTGTCAGTCAGAGAATTCTCTCAAACATCACTTGATCTGGCACAAATCAAAGACTTCTCTTTACGGATCTAGATATGAGTGTGAGATATGCAATTTGCAGTTCACTAACAAGAAGCGTTTGGAGATTCATGATAGATCACACTATGAAGATGACAATGGTCCATTTAAATGTAACATATGTGGCAAGGGTTACATTGCTGAGAGTTACTTAAGGAAGCATGTCAAGGGTCACAACTTTGATCACCAATCCCATAAAAAACGAATCGAAAAATTGAGGAAAGATAAAGTAAAATGCCCCATTTGTACCAAATTTTATCCGGACTTGGTGAAACTGATTCGGCACTTGCGAAGAACTCATCCTGAGAGCAAAATGATAAAAGAAGACCCAGATGCGCCGCAACAGCCATATTTTTCTTGTAAACTTTGTGCAAAAGTCTTTTTGGATGAGCGAAGGCTACAACATCACGAAGAAGCTCATCTTCGCAAACCAGAATTCTTTAAGTGTAAATTCTGCGGCAAGAAAACGATTTCCTTGAAAAATCACAGAGTACATATTAAAGGACATCTCACACAGAAGTATATTGATGAGCCCCTTAAGTGTGCACATTGTGAGGAAACATTTACGAGAGGCTATGACTTACACCACCATTTACGAGATGTACACAATATTAATGAAACATGGATAGCAGACAGAAATAATGAACATTTAGATGGACCCTTGAAAGATCTTCAGTGTTCCATCTGTCACAAAGTGTTAGCCAGCCAAGGGAACTATGAGAGACATTTAGACTACCATAATTCTCTTCGCTGCAATTATTGTTATGATAACTTCAGTTCTTTAAGGTTTTTGGATGGTCATTTGGCATTTAGCTGTGATAAGAAAAAATTGATTGGGGATACTGAAATCTATCCccgaaaaataaaatgtaaaatgtgttACAAACCATTCCATCTACAAGTTAAACTGGATTGTCATTTACGCACAGTGCACGGAATTAAGTCTTTCAAACAGGCTTCATATAGAAAGAGAGAGATTGTGTGTGATTATTGTTTTAGAGTTTTCGAAAATGAAGATTCCTTAACAAGCCATAAACTTTATCACAGAACTATAGGGTATTATGGGTGCATTTATTGTcctaaaaaatttaatactcTCACGGCATACAGAAAACACAAAAACCATCATTTTGCTCAACTTAATGTAGACAATCCTACAAAGTGCGAACATTGTGACGAAACCTTTGTTCCATTCAGGGAATTCATTTACCACATGAGAGATGTTCATCAGGATGATAAGGAATGGGTTGTGATGCCAAAGGAGGTGATTGAAGAGAAGTGCAACATATGCAACAAAATATTCTATAATCTTCAAAGACACCTTATGTACCATGAGGAAAACAGATGCAAAAAGTGTGGGGAATACTTCTTTTCGCATATCGATTATGATAACCACATCTGCCATATTGACAGCGAAGATGAAGTCCAAGAAAACGACGATACCGACATACGACCTAAATACGAAGAGTGTAGATTTTGTTTCAAACAACTCACATATAAAACTCAAAAAGTGCACGACATACTTCACAAGGGGTCAGGCTCTATATCCTGTCGCTTCTGTACTCTCAAATTTAAGACCATGGATGCTTTTAACATTCACGCCTTTTCTCACAGAAGCAGAAAGTACAAAAAGAGGCCTATAAAGTGTAGACTTTGCCCAGAGAAGTTTGTGAAATACGGACCTTTCATGCGACACATGAAATTCGTTCACAAGTCTACCAAAAAGGTTCATTACAGAGCCACTGTTAAACCGGAGAAGTGTGTGGTGTGTGGGGATCTGTTCCCCAATTTGCACAACCACTACAGGGCTCATTTACAGAATCAGTGTCAGCAAtgtcttaaatattttacttccTCGAAATTGTTCACAAAACATGAGTGCGACAAAGAGGACTCAGACCCTTCGAAAGTTTTTACTTGTGATGCGGATCTTATACACTTGATTAACACTTTCGTTCCCACGGACGAGAAAGATGACGAAAAGTTCTACGGTTATGATGAAGAGGATGATATTGACGAAGGACAAAACAATGAGCTTCCTGATAATGAAGACAGTCAAAACTCAGCAGACACAGCTGAGGATAAAATACATGAAATGGTTCACGCGCCTATCATTTCTGACGTATTATCGCTTTACAAAAGCAAAGATGTTgacaatttaaaacaaataacaatgggTGATCCAAATGTcatagatcttgtagatgatgATTCCATTGGTTTCGAAAGTGCTCCCATTCCAGTAATTACTATTGATTGTGATGATTCACAATGA
Protein Sequence
MQAIQDGDGLPDKICSECIQKLSSAHIFKQQCERSDQELRRNYVPPPGFTSPSEQNRQSSDSAFSTQTDSSKPSSSQVTPISRTRKRSSESIDNASSSGVSHDYNPKTTKRVEELRQSQKRAKLKTNSDSDYEYSGSVYSGGTDSDEPIEYKCDICSKVFNKYQSLNAHKKTHKRSSDSGMSPQPSRKSLTAPSPIPVLSTSSDYLEAKDANDCEDKINCEKCGKSFKLKIMLKRHKEVCGKLIDKELKISLEPIDSTPKQNAIDCKMCTTKFKTVATLEKHMRVVHAAVLKRESDVKVSADGKPIVPCFYCNKPYDDYYSHTAHFRVCPKRDDSLSFTCTVCGKYLLKKASYYVHIKEHFHPSKDLNPSADSPRTLKCRFCKAKLASQELLISHLASHMDDENDFEDVESRNSTIEDSGSVHSDYNNSKVSTGPLKCPYCDARFKYKKALETHQITKHSVDPKNVSIKSEPPDLKESPDHLGEPLNDEQYDSDSSQGDDNDNTCDICERQFSYKRLLIHHKRTKHNISSGTKRAKITLKDCLVRCLICDLEMKVSAINEHNQKHITANIKPRNLYTCTECKQQFKSCSGLANHIKIVHRLQLKPQAPQVSDATPDLADFCEVVVTKAEPLEIQSHNGFQEGSAPSVNMSGFTCPTCNKQMPTLISLKRHMNWHTNVGGKIEKQYECFVCNEIFRFQCHYKMHMREHYHDTNLDPKYLTCSICNRKSKHLRAAQAHMNFHKQTRFKNKDYECSICKRVFQYRKVYLSHMAIHYKRGESTNNTVVGSVLPNTADMTVFDGTHTCQLCGKVCQSENSLKHHLIWHKSKTSLYGSRYECEICNLQFTNKKRLEIHDRSHYEDDNGPFKCNICGKGYIAESYLRKHVKGHNFDHQSHKKRIEKLRKDKVKCPICTKFYPDLVKLIRHLRRTHPESKMIKEDPDAPQQPYFSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRVHIKGHLTQKYIDEPLKCAHCEETFTRGYDLHHHLRDVHNINETWIADRNNEHLDGPLKDLQCSICHKVLASQGNYERHLDYHNSLRCNYCYDNFSSLRFLDGHLAFSCDKKKLIGDTEIYPRKIKCKMCYKPFHLQVKLDCHLRTVHGIKSFKQASYRKREIVCDYCFRVFENEDSLTSHKLYHRTIGYYGCIYCPKKFNTLTAYRKHKNHHFAQLNVDNPTKCEHCDETFVPFREFIYHMRDVHQDDKEWVVMPKEVIEEKCNICNKIFYNLQRHLMYHEENRCKKCGEYFFSHIDYDNHICHIDSEDEVQENDDTDIRPKYEECRFCFKQLTYKTQKVHDILHKGSGSISCRFCTLKFKTMDAFNIHAFSHRSRKYKKRPIKCRLCPEKFVKYGPFMRHMKFVHKSTKKVHYRATVKPEKCVVCGDLFPNLHNHYRAHLQNQCQQCLKYFTSSKLFTKHECDKEDSDPSKVFTCDADLIHLINTFVPTDEKDDEKFYGYDEEDDIDEGQNNELPDNEDSQNSADTAEDKIHEMVHAPIISDVLSLYKSKDVDNLKQITMGDPNVIDLVDDDSIGFESAPIPVITIDCDDSQ*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00875543;
90% Identity
iTF_00875566;
80% Identity
-