Basic Information

Transcription Factor Domain

TF Family: GCFC
Domain: GCFC domain
PFAM: PF07842
TF Group: Unclassified Structure
Description: This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 2 2e-42 1.8e-38 133.3 1.1 173 275 5 109 2 109 0.97

2 2 0.00056 4.9 7.2 0.1 244 272 123 151 114 154 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	2	2e-42	1.8e-38	133.3	1.1	173	275	5	109	2	109	0.97
2	2	0.00056	4.9	7.2	0.1	244	272	123	151	114	154	0.88

Coding Sequence: GCAGGAGTTCGTTTGGATACTTTGATATATCCAATAATACGACGTAAATTAGGATCTGCATTGGGCGGTTGGCATCCATCTGATAGATCTGCTAGGTTAATGTTACAACCATGGTCTACAGTTTTCGCCAAAGGAGATATGGAAGCTTTCCTAGTGAAGAATATCATACCGAAATTACAAATAGCACTTTCGGAATTCGTTATAAATCCACATCAGCAACATTTAGATCAATGGAACTGGGTCTATGAATGGAAGGAATTAATTCCTTCTCACATAATGGCAGGATTGTTggataaattctttttcccTAAATGGTTACAAGTTTTAGCATTGTGGTTAAATCATTCCCCCAACTATGATCAAGTTACGAATTGGTACATGGGATGGAAAAGTATGTTGAGTGAAAAAATATTGGCCGAACCGTTGGTGAAAGAACACTTCAAAAAAGCATTAGAAATGATGAATAGAGCAGTTTCCGTGCCGCAGAGTCATCAACCTGGCGCAATGGAACAAGTTTCATATTTAACGAGCTTAGAAAGAACTCAGCCCACCATGTCACAAATGCCTTCAACTGCTCAACCTAGAATGGAGAGACTTGCTGAAGCAGTCAGAACAGCATCACAGATACCTCAAGGTTTCAAAGATCTCGTTGAAAAGAAATGCGAGGAAcgaggaatattatttatgccaATACCAAATCGGTATAGGGAAGCAAAACAAGTGTATAAAGTTGGCAATGTTCAAGCTTATATAGACGgaaatgttttatttgtttgtcACAATGGCATGAATTGGATGCCAACGCACTTAAATGCTTTACTAGACATGTCTGAACTCTAG
Protein Sequence: AGVRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWSTVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVYEWKELIPSHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTNWYMGWKSMLSEKILAEPLVKEHFKKALEMMNRAVSVPQSHQPGAMEQVSYLTSLERTQPTMSQMPSTAQPRMERLAEAVRTASQIPQGFKDLVEKKCEERGILFMPIPNRYREAKQVYKVGNVQAYIDGNVLFVCHNGMNWMPTHLNALLDMSEL

Sequence clustering based on sequence similarity using MMseqs2