Ccal019755.1
Basic Information
- Insect
- Ceratina calcarata
- Gene Symbol
- tfip11
- Assembly
- GCA_026724355.1
- Location
- JAKKRE010000015.1:1231971-1232829[+]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-24 2.9e-20 73.6 5.3 213 275 1 63 1 63 0.98 2 2 0.00088 5.9 7.0 0.2 244 272 77 105 68 108 0.88
Sequence Information
- Coding Sequence
- ATGGAAGCGTTCCTCGTGAAAAACATAATTCCCAAATTGCAAATAGCCCTCTCGGAATTCGTTATAAATCCGCATCAGCAACACTTGGAACAATGGAACTGGGTGTACGAATGGAAGGAATTGATCCCGACTCACATAATGGCCAACCTGCTAGACAAGTTCTTCTTCCCGAAATGGTTGCAAGTTCTAGCTCTCTGGTTAAATCATTCACCTAATTACGATCAAGTCACGAACTGGTACATGGGATGGAAGAACATGTTGAGCGAAAAAATATTAGCCGAACCTTTAGTGAAAGAGCACTTCAAGAAAGCGTTAGAGATGATGAACAGAGCAGTTACGGGGTCGCAGAGTCATCAACCGGGCGCGATGGAGCAAGTTTCTTATCTAACTAGTTTAGAGAGAACGCAGCCTACCATGTCACAGATGCCACCGACCGCACAACCGAGGATGGAGAGGCTCGCCGAAGCAGTTAGAACAGCGTCGCAGATACCACACGGTTTCAAAGATCTCGTCCAAAAGAAATGCGAGGAAAGAGGTATTTTGTTTATGCCCATACCGAACAGATACAGGGAAGCGAAACAAGTTTATAAGGTGGGCAACGTGCAGGCGTACATTGACGGGAATGTTTTATTCGTTTGCCATAATGGCATGAACTGGATGCCGACGCATTTAAACGCTTTACTAGACATGTCTGAACTCTAG
- Protein Sequence
- MEAFLVKNIIPKLQIALSEFVINPHQQHLEQWNWVYEWKELIPTHIMANLLDKFFFPKWLQVLALWLNHSPNYDQVTNWYMGWKNMLSEKILAEPLVKEHFKKALEMMNRAVTGSQSHQPGAMEQVSYLTSLERTQPTMSQMPPTAQPRMERLAEAVRTASQIPHGFKDLVQKKCEERGILFMPIPNRYREAKQVYKVGNVQAYIDGNVLFVCHNGMNWMPTHLNALLDMSEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00182616;
- 90% Identity
- iTF_00873795;
- 80% Identity
- -