Atex005380.1
Basic Information
- Insect
- Atta texana
- Gene Symbol
- TFIP11
- Assembly
- GCA_004480015.1
- Location
- QEPB01026494.1:1900-2954[-]
Transcription Factor Domain
- TF Family
- GCFC
- Domain
- GCFC domain
- PFAM
- PF07842
- TF Group
- Unclassified Structure
- Description
- This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.9e-43 1.6e-39 136.7 1.0 170 275 13 121 7 121 0.96 2 2 0.0048 41 4.1 0.1 245 272 136 163 126 166 0.85
Sequence Information
- Coding Sequence
- atgaattattgtaataataactgtttttatatcattcaAGGAAATCGTTTAGATACTTTGATTTATCCAATAATACGTAGAAAACTCGGATCTGCATTAGGAGGTTGGCATCCATCAGATAGATCCGCTAGATTAATGTTGCAACCATGGGCAGAAGTATTTGCTAAAGGAGATATGGAAGCATTTTtagtcaaaaatattattccaaaATTGCAAATAGCCTTATCCGAGTTTGTTATAAATCCACATCAACAGCACTTAGATCAATGGAATTGGGTGTATGAATGGAAGGAATTAATACCTGTTCATATAATGGCAGGATTACTTGACAAATTCTTTTTCCCAAAATGGTTACAAGTTTTAGCACTTTGGCTCAATCATTCGCCTAATTATGATCAAGTAACAACTTGGTACATGGGTTGGAAAGGGATGTTAAATGATAAGTTACTAGCGGAACCAGTAATAAAAGAGCATTTTAAGAAAGCATTGGACATGATGAATAGGGCTGTTAGTGGGCCACAAACTCATCAACCTGGCGCAATAGAACAAGTTTCATATTTAACAAGCTTAGAAAGAACTCAGCCAACAATATCACAGGTGGCACCGATTGCGCAGCCGAGAATGGAGAGACTCGCAGAGGCAGTACGAACAGCTTCACAAATACCGCAGGGTTTCAAGGATTTCGTACAAAAGAAGTGTGAAGAGAGaggtatattatttatgccgATTCCGAATAGATATAAGGAGGCTAAGCAAGTGTACAAAGTAGGTAATGTTCAGGCTTACATTGACAGCAATGTCTTATTTGTATGTCATAATGGTACAAATTGGATGCCAACGCATTTGAATGCCTTGTTGGATATGTctgaactttaa
- Protein Sequence
- MNYCNNNCFYIIQGNRLDTLIYPIIRRKLGSALGGWHPSDRSARLMLQPWAEVFAKGDMEAFLVKNIIPKLQIALSEFVINPHQQHLDQWNWVYEWKELIPVHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTTWYMGWKGMLNDKLLAEPVIKEHFKKALDMMNRAVSGPQTHQPGAIEQVSYLTSLERTQPTISQVAPIAQPRMERLAEAVRTASQIPQGFKDFVQKKCEERGILFMPIPNRYKEAKQVYKVGNVQAYIDSNVLFVCHNGTNWMPTHLNALLDMSEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00873795; iTF_00303027; iTF_01422227;
- 90% Identity
- iTF_01422227;
- 80% Identity
- -