Basic Information

Insect: Lasius niger
Gene Symbol: -
Assembly: GCA_001045655.1
Location: LBMM01006732.1:759-9375[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 1e-05 0.0011 19.3 0.1 2 23 667 688 666 688 0.97

2 15 0.18 19 6.0 0.8 1 19 694 712 694 713 0.93

3 15 3.5 3.8e+02 1.9 0.8 2 23 721 742 720 742 0.92

4 15 7e-05 0.0075 16.7 1.3 3 23 751 772 750 772 0.98

5 15 0.0065 0.7 10.5 2.8 1 23 779 802 779 802 0.95

6 15 5.2e-05 0.0056 17.1 0.7 1 23 808 831 808 831 0.94

7 15 0.95 1e+02 3.7 1.1 2 23 839 859 839 859 0.90

8 15 7.7e-08 8.2e-06 26.0 2.1 2 23 865 886 864 886 0.97

9 15 2.8e-06 0.0003 21.1 0.3 1 23 892 914 892 914 0.99

10 15 0.00031 0.033 14.6 2.4 2 23 926 948 925 948 0.95

11 15 0.0044 0.47 11.0 2.5 1 23 954 977 954 977 0.96

12 15 0.0066 0.71 10.5 3.0 2 23 998 1020 997 1020 0.95

13 15 1.5e-05 0.0016 18.8 1.0 2 23 1027 1049 1026 1049 0.96

14 15 3.2e-05 0.0034 17.8 1.0 3 23 1058 1078 1056 1078 0.96

15 15 0.0013 0.14 12.7 2.6 1 23 1084 1107 1084 1107 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	1e-05	0.0011	19.3	0.1	2	23	667	688	666	688	0.97
2	15	0.18	19	6.0	0.8	1	19	694	712	694	713	0.93
3	15	3.5	3.8e+02	1.9	0.8	2	23	721	742	720	742	0.92
4	15	7e-05	0.0075	16.7	1.3	3	23	751	772	750	772	0.98
5	15	0.0065	0.7	10.5	2.8	1	23	779	802	779	802	0.95
6	15	5.2e-05	0.0056	17.1	0.7	1	23	808	831	808	831	0.94
7	15	0.95	1e+02	3.7	1.1	2	23	839	859	839	859	0.90
8	15	7.7e-08	8.2e-06	26.0	2.1	2	23	865	886	864	886	0.97
9	15	2.8e-06	0.0003	21.1	0.3	1	23	892	914	892	914	0.99
10	15	0.00031	0.033	14.6	2.4	2	23	926	948	925	948	0.95
11	15	0.0044	0.47	11.0	2.5	1	23	954	977	954	977	0.96
12	15	0.0066	0.71	10.5	3.0	2	23	998	1020	997	1020	0.95
13	15	1.5e-05	0.0016	18.8	1.0	2	23	1027	1049	1026	1049	0.96
14	15	3.2e-05	0.0034	17.8	1.0	3	23	1058	1078	1056	1078	0.96
15	15	0.0013	0.14	12.7	2.6	1	23	1084	1107	1084	1107	0.96

Sequence Information

Coding Sequence: ATGATTCTGAAGAAAATGCCAAACTCTGAAATCAATAAGCGTGACCATAATTATAGTGAATCGGAACCACCTCAGAATGTCAACAATTCCGACAGCATTATCAGCAGGGAATCCAAAATGGCGCCTATTGTTGGCCAGATTAAAGATATCGATGAGCTGAAGAAGATCGCACCACGCGTCCGACTACAAGATGCCAAGAGCTTGAATGAATTGACAAGGATCTCGTCCTTGAGCAATAGTAAATCGCAGCAAAGCAAGTTGTCCATTTCTGAGAGGACTCagcaagaattaaaaaaatattgtcgtaCTTGTGCTGGTCTAAAATTGCCGTTGGTGGACATTTTCAGCGAGAAGGGTGTCAAATTGCGACTGAGTCAGCAAATTAAGCATCTGGAAGTGAATCCTTACGATAGCCTTTCTACACAGATGTGCATGGATTGCATCTGTGATCTTAAGATGAGTTACAAATTCTTCATGCAGATCAAAAAGGCCGAGATGAAACTCAAATCCATTCACGTCAACTTGACAACCGATAACGTTGCAAAGAAAGCGGAATCGATTGATGAGTCTTTGATAACAAAACAGGAAGAACAATTATCCTGCATAGaaacaaagCAAGAGCGCGAATCACTTTCCACAATTCAACAAAATCCATCTTTGTCATTAATAAAGCAAGAAAGTCaaataattatgagaaatCAAGAAGACAACTCTGCTCCCAAAATTTGTGCCATCTTTTCGTTGAATAATGAATCGAAgatggaagaggaagaggaaggggCGAGGGTGGGCGGAGGAATCTTCGAGGAGATAGCAGAGGGAGAGGACGAAGAATCTATTGAGGAATTTGATCCCGAAGACCCGGCTTTCcatgaagatgaagaagaagaagaattttcAAGGTCTCCAGCTGCTGTTTACAAGTATGACATGTTGGCAAAGTCTTATGTGAGAGTGGAAGGAGGTGAGGAAGTAGTTTCCATGAAATCTGGGATCACTCAGACTTCAGAGGGTGAAGGAGAAAATCAAAGAGAGGGAATGAGACAACCAAATATTCTGAAAAGAAGATTATTGATGTCAACAACAACGACGAAGAGTGGGGAAAAGGATGGGATGCAGAATGAAGTGGAAAGTACTCTGAAGGAGTGCAAGGTGCAAAAATTAGACTTGAATAATCCACTGAGTGTGAACAATGCTCCACATGAGGATGGAATTATGTACGTAACCGTGAAGGGGTCCAAACCAAACGAGATTTTATTGGTGAAGGTCAAGAAAATGGACAAACCCATGGAATCAAAACGCATAGTATCCTCCACCGATCTCAAGCCCGTTGAACGTTTCCTCAAACGCTATGAGACCTTGGCATCGCGAGACTCCTCATCTCGACGTCCTGATGCCCGCGAGCAAATAATTGAGGAACAaatcgaagaatataaaaagaaacgcgaGAAAGTCCTCGGAAATCAATCAGCAAAGACCTGTACCGTAAACGAGAcgcaaaaagaaatacaagaagaaaatatttgggCCACATTAAGTCCCAAAAAGGCGGAAAAAGAAGTATTGGTTTCAACAAAAGAagatgaagagaaagagaaggaagaggaaacGGAGGAAGGCGAAAAAGTCAATGAAAGTCAAGAGAAAGTTAATGATAGTACGAaggaatatatttcaaaattatcgagaGAAAAGTTGAAATGGGAAGAGGCAAAGCAGAAGAAAGAAAGTCTGCAGAACCAGGAATCAGACGAGACATATATCGAAGGGAATTTGGAAAAGTTGATGAGAATCttgggagagaaggagaagaattTGCAGGAATTCCAGGAATACTTGAAGCAGCGCAAGATCGTTCTTACTCGTCTCAAAGACGAGGATGTAATCTCTCTCTATGAAGATCGTTTTTCCATCACGTTGAAATTACCTCCTAAACCCCTGCCGGATCTTATAGACATTCAACCATCTGTTGATTTGCTGCCCATAGAGCGTTATCTGGAATGCGATTACTGCCCGGAGACTTTTTCCAATCGTGATGTCCTCGAAGAACACCTGAAAACTCACGACTACCGCATTCTTCACTATTGCGACGACTGTGAAGAAGAATTTCCAACTAATAAAGCAAAGAGAAATCATAATGTCATTTGTGTAAGAAagttaatttgcaaatattgcgATCTACTTTTGGATTCCAGAGGGAAAAAACGTCAACATGAGCAGAAACATATTGATGCCCTTTATGGACAACTTTGCGAAGTTTGCGGAGAAAGATTCAAACACCAGGGAACCCTGGATCAGCACTTGAAAACACAACATAcgattttagagaaaatttatcagtGTTCAAAGTGtccaaaaaaatttgctttcaAGCAAAAACTAAGTTTTCATCTAAAATCAGTACATACAACTTTAAGAGCATATCTTTGCGAAGATTGCGGTGCAGATTTTAAGAATCCTGCGAGTTTAAGGCATCACAGAATTAGAAAACATCAACCTGTCGGAAACAAGAGGGAATGTCCCGTTTGCAGGAAATTAGTGCCGTTTTATAGTTTATCCAAACACATGCACACGCACAAAGCTTATAGTATTCAGTGTCCGCATTGTGAcaagatgtttaaaaatagCTCGACCTTGAAGCAACACGTGAGGATTCATGAAGATCAAAGACAATATCGTTGTGACACTTGCGGGGTTGGGTTTAATCGAAGGGATGGTTTGAGACTGCACATGAAGGTGCACGAAAAAACGGGTAGTAGGGGCTTAAAAGAGTGTTCTTGCCAAGTTTGTGGAGAAAAATTCCCGAATCATTCGACCTTGGTAATTCATAGGAATAGAGTGCACAAGGATGGCAGGCAATATACATGTCACATTTGTAATAGATCGATGATTTCGACAAGATCGCTCGAATGGCATATGTCACATATTCATAATGAGTCGATGCCAGGCGTTACACGCGACGAGTCCGGTCCGCCTGAAAAAAAACGGGTTTCCTGTTATCACTGCAATAAAACCTTCAAGACGGAGATGATACTGCGTACACACATCAAAAACACTCATATGGCAAAAGATCCAATGAAGTGCACTGACTGCGACGAGACTTTCACATCCGAAGTACGTCTACGTCATCATATGATGGTCGCACACAACCGTCTCGAGGGCACTTTGGCGTGTCCTCACTGTCCGAAACGATTCGTGAATCAATTAAGGCTAAAGACTCACATGATTTCTCATTCTGAGGATAGGCCGTACACTTGCGAGATTTGCGGTTTCAACTTGAAGACGAAGATCCAGCTGCTTAAGCATCATCAAAACCGACACAGTGACGAAAGACCTTTACAGTGCAGtTACAGATTTTGTTATCgcatctatttaataaatttggaagattaa
Protein Sequence: MILKKMPNSEINKRDHNYSESEPPQNVNNSDSIISRESKMAPIVGQIKDIDELKKIAPRVRLQDAKSLNELTRISSLSNSKSQQSKLSISERTQQELKKYCRTCAGLKLPLVDIFSEKGVKLRLSQQIKHLEVNPYDSLSTQMCMDCICDLKMSYKFFMQIKKAEMKLKSIHVNLTTDNVAKKAESIDESLITKQEEQLSCIETKQERESLSTIQQNPSLSLIKQESQIIMRNQEDNSAPKICAIFSLNNESKMEEEEEGARVGGGIFEEIAEGEDEESIEEFDPEDPAFHEDEEEEEFSRSPAAVYKYDMLAKSYVRVEGGEEVVSMKSGITQTSEGEGENQREGMRQPNILKRRLLMSTTTTKSGEKDGMQNEVESTLKECKVQKLDLNNPLSVNNAPHEDGIMYVTVKGSKPNEILLVKVKKMDKPMESKRIVSSTDLKPVERFLKRYETLASRDSSSRRPDAREQIIEEQIEEYKKKREKVLGNQSAKTCTVNETQKEIQEENIWATLSPKKAEKEVLVSTKEDEEKEKEEETEEGEKVNESQEKVNDSTKEYISKLSREKLKWEEAKQKKESLQNQESDETYIEGNLEKLMRILGEKEKNLQEFQEYLKQRKIVLTRLKDEDVISLYEDRFSITLKLPPKPLPDLIDIQPSVDLLPIERYLECDYCPETFSNRDVLEEHLKTHDYRILHYCDDCEEEFPTNKAKRNHNVICVRKLICKYCDLLLDSRGKKRQHEQKHIDALYGQLCEVCGERFKHQGTLDQHLKTQHTILEKIYQCSKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCRKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMKVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESMPGVTRDESGPPEKKRVSCYHCNKTFKTEMILRTHIKNTHMAKDPMKCTDCDETFTSEVRLRHHMMVAHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEDRPYTCEICGFNLKTKIQLLKHHQNRHSDERPLQCSYRFCYRIYLINLED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01255001;
90% Identity: iTF_00869073; iTF_00730244; iTF_01077673; iTF_00730956; iTF_01245392; iTF_00280118; iTF_00867637; iTF_00729528; iTF_01255001; iTF_00264479; iTF_00265193;
80% Identity: -