Basic Information

Insect: Polyergus mexicanus
Gene Symbol: -
Assembly: GCA_030449975.1
Location: JAUDSZ010000004.1:13036916-13046215[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00044 0.077 14.8 0.1 2 23 668 689 667 689 0.96

2 17 0.34 59 5.7 0.8 1 19 695 713 695 714 0.93

3 17 6.8 1.2e+03 1.6 0.8 2 23 722 743 721 743 0.92

4 17 0.00013 0.024 16.4 1.3 3 23 752 773 751 773 0.98

5 17 0.0029 0.5 12.2 2.0 1 23 780 803 780 803 0.95

6 17 0.0001 0.018 16.8 0.7 1 23 809 832 809 832 0.94

7 17 1.8 3.2e+02 3.4 1.1 2 23 840 860 840 860 0.90

8 17 1.5e-07 2.6e-05 25.7 2.1 2 23 866 887 865 887 0.97

9 17 5.4e-06 0.00095 20.8 0.3 1 23 893 915 893 915 0.99

10 17 0.0006 0.1 14.4 2.4 2 23 927 949 926 949 0.95

11 17 0.0084 1.5 10.8 2.5 1 23 955 978 955 978 0.96

12 17 0.013 2.2 10.2 3.0 2 23 999 1021 998 1021 0.95

13 17 3.2e-05 0.0057 18.4 0.9 2 23 1028 1050 1027 1050 0.96

14 17 6.1e-05 0.011 17.5 1.0 3 23 1059 1079 1057 1079 0.96

15 17 0.0013 0.22 13.3 2.3 1 23 1085 1108 1085 1108 0.96

16 17 0.35 61 5.7 3.2 2 23 1115 1136 1114 1136 0.96

17 17 0.01 1.8 10.5 2.6 1 23 1142 1164 1142 1164 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00044	0.077	14.8	0.1	2	23	668	689	667	689	0.96
2	17	0.34	59	5.7	0.8	1	19	695	713	695	714	0.93
3	17	6.8	1.2e+03	1.6	0.8	2	23	722	743	721	743	0.92
4	17	0.00013	0.024	16.4	1.3	3	23	752	773	751	773	0.98
5	17	0.0029	0.5	12.2	2.0	1	23	780	803	780	803	0.95
6	17	0.0001	0.018	16.8	0.7	1	23	809	832	809	832	0.94
7	17	1.8	3.2e+02	3.4	1.1	2	23	840	860	840	860	0.90
8	17	1.5e-07	2.6e-05	25.7	2.1	2	23	866	887	865	887	0.97
9	17	5.4e-06	0.00095	20.8	0.3	1	23	893	915	893	915	0.99
10	17	0.0006	0.1	14.4	2.4	2	23	927	949	926	949	0.95
11	17	0.0084	1.5	10.8	2.5	1	23	955	978	955	978	0.96
12	17	0.013	2.2	10.2	3.0	2	23	999	1021	998	1021	0.95
13	17	3.2e-05	0.0057	18.4	0.9	2	23	1028	1050	1027	1050	0.96
14	17	6.1e-05	0.011	17.5	1.0	3	23	1059	1079	1057	1079	0.96
15	17	0.0013	0.22	13.3	2.3	1	23	1085	1108	1085	1108	0.96
16	17	0.35	61	5.7	3.2	2	23	1115	1136	1114	1136	0.96
17	17	0.01	1.8	10.5	2.6	1	23	1142	1164	1142	1164	0.98

Sequence Information

Coding Sequence: atgattctgaagAAAATGCCAAACTCTGAAATCAATAAGCGTGATCATAATTATAGTGAATCGGAACCACCTCAGAATGCCAACAATTCCAACAGTAGCATTATCAATAGGGAATCCAAAATGGCACCTATTGTGGGCCAAATTAAGGATATTGATGAGCTAAAAAAGATCGCGCCACGCGTTCGACTACAAGATGCTAAGAGTCTAAATGAGTTGACAAGGATCTCGTCCTTAAGTAACAATAGCAGTAAATCACAGCAAAGCAAGGTGTCTGTTTCTGAAAGGACTCaacaagaattaaaaaaatattgtcgtaCTTGTGCTGGTCTAAAATTACCCTTGGTGGACATCTTTAGTGAGAAAGGTATCAAATTGCGATTGAGCCAGCAAATCAAGCATTTGGAAGTAAATCCTTACGATAGCCTTTCTACGCAGATGTGTATGGACTGCATCTGTGATCTTAAAATGAGTTACAAATTCTTTATGCAGATCAAAAAGGCCGAGGTAAAACTCAAGTCTATTCATGTCAACTTGACAACCGATAATGTCACAAAAAAAGTGGATCCGAATAATGAGTCTTTAATAACAAAACAGATAAAGCAACCATCCTGTTTAGAAATAAAGCAAGAGCACCAATCACTTTTCACAATCCAAGAAAATTCATCTTTATCATCAACAAAGCAAGAAAGCCAAACAATTATGAAAAATCAAGAAGACAACTCTACTCCCAAAATTTGTGCTATCTTTTCATTGAATAACGAGTCAAGGATGGAAGAGGAAGAAGCACGGGTGGGCGGAGGAATCTTCGAGGAGATAGCAGAGGGAGAGGACGAAGAATCCATCGAAGAATTTGATCCCGAAGATCCGGCTTTTCAGgaagatgaagaagaagaagaagaattttcAAGATCTCCAGCCGCTGTTTATAAGTATGATATGTTGGCAAAATCTTATGTGAGAGTGGAAGGAGGTGAGGAGGTAATCTCCATGAAATCTGGGATTTCCCAGACTTCAGAGGGTGAAGGAGACAATCAAAGAGAGGGAATGAGACAACCAAATATCCTGAAAAGAAGATTATTGATGTCAACAACAACGAAAAATTGGGAAAAGGATGAGGTGCAGAATGAGATGGAGAGTACTCCAAGGGAGTGCAAGATGCAAAAGTTAGATTTGAATAATCCACTGAGTGTAAACAATACTTCACACGAGGACGGAATTATGTATGTGACTGTAAAAGGATCCAAACCTAACGAGATTTTATTGGTGAAGGTCAAGAAAATGGACAAACCCATGGAATCAAAACGTATAGCATCTTCCACCGATCTCAAGCCCGTTGAACGTTTCCTCAAACGCTATGAGCCCTTGGCATCGCGGGATTCCTTATCTCGACTCTCTGATGCCCGCGAGCAAATAATTGAGGAGCAAAtcgaagaatataaaaagaaacgcGAGAAAGTCCTCGGAAATCAATCAGCAAAGACCTTTACCATGAACGAGACACAAAAAGAAGtacaagaagaaaaaatttggaCTACATCAAGCCCCAAAAAGGTGGAAAAGGAAATAATAGTTTCAACAAAAGAAgatgaagagaaagagaaggaagaagaTGTGGGAGAAAGTGAAAAAGTCAACGAAAGTCAGGAGAAAGTTAATGATAGTACAaaggaatatattttgaaattatcaaGAGAAAAACTGAAATGGGAAGAGGTAAAGCAGAAGAAAGAAAGTCTGCAGAACCAGGAATCAGATGAGACATATACTGAAAGCAATTTAGAGAAATTGATGAGAATCTTGggagaaaaggaaaagaatttgCAGGAATTCCAGGAATACTTGAAGCAGCGCAAAATCGTTCTTACTCGTCTTAAGGATGAAGACGTAATCTCTCTCTATGAAGAACGTTTCTCTATTACATTGAAATTACCTCCTAAACCTTTGCCAGATGTTATAGAGGTTCAATCATCTGTCAATCCGCTTTCTATGGAGCCTGATCTGGAATGTGATTACTGTCCGGAAACTTTTTCCAATCGCGATATTCTCGAGGAACACCTCAAAGTTCATGACTATCGCATCCTTCACTATTGCGATGATTGTGAGGAAGAATTTCCAACTAACAAAGCGAAGAGAAATCATAATGTTATTTGTGTAAGAAAGTTAATTTGCAAATATTGCGATCTACTTTTGGATTCCAGAGGGAAAAAACGTCAACATGAGCAAAAACATATTGATGCTCTTTATGGGCAACTTTGCGAAGTTTGCGGAGAAAGGTTCAAACATCAGGGAACTCTGGATCAGCATCTGAAAACGCAACATAcgattttagagaaaatttatcaGTGTCCAAAATGTCcaaaaaaatttgcttttaAGCAAAAACTAAGTTTTCATCTAAAATCGGTACACACAACTTTAAGAGCATATCTTTGTGAAGATTGCGGTGCAGATTTTAAGAATCCTGCAAGTTTAAGGCATCATAGAATCAGAAAACATCAACCGATCGGAAACAAGAGAGAATGTCCCGTTTGCAGGAAATTAGTGCCGTTTTATAGTTTATCCAAACACATGCACACGCACAAAGCTTATAGTATTCAGTGCCCGCATTGTGACAAGATGTTTAAAAATAGCTCGACTTTGAAGCAACATGTGAGGATTCATGAAGATCAAAGACAATATCGTTGTGATACTTGTGGAGTTGGGTTTAATCGAAGGGATGGTTTGAGACTGCATATGAAGGTGCATGAAAAAACGGGTAGTAGAGGCTTGAAAGAATGTTCATGCCAAGTTTGTGGAGAAAAATTCCCGAATCACTCAACCTTGGTGATTCATAGGAACAGAGTGCACAAGGATGGCAGACAATATACATGTCACATTTGCAATAGGTCAATGATTTCGACGAGATCACTCGAATGGCATATGTCACATATCCATAATGAATCGATGCCAGGTATTACTCGCGACGAGTCCGGTCCACCTGAAAAAAAACGGGTTTCCTGTTATCACTGTAATAAGACTTTCAAAACGGAGATGATATTGCGCACACACATTAAAAACACTCATATGGAAAAGGATCCAATGAAATGCTCTGACTGTGACGAGACTTTCACATCCGAAGTACGCCTGCGGCATCATATGATGGTCGCGCACAACCGTCTCGAAGGCACTTTAGCATGTCCCCACTGTCCGAAACGATTCGTGAATCAATTAAGACTAAAGACTCATATGATTTCTCATTCTGAGGAAAGGCCGTATACTTGCGAGATTTGCGGTTTCAACTTGAAGACAAAGATCCAGTTGATTAAACACCATCAGAATCGACACAGCGATGAGAGACCCTTGCAGTGCAGATATTGTCCCTGGCGGTGCAAGCAGGTGAGTGCCCTCGTCTGTCATGAACGCACACACACCAACGAGCGTCCGTATTCGTGCAGTGTGTGTCGGCAGCGCTTCAAATATCTCGGCGATAAAAACAAACATGAGCGGCGTCACGAAAGCCTTGGTGGTTCGGGTTTCAAACGCATTGTACCCGGAAGGAATATCAAACCAAAAGTACGCGCCGACGATTCCTCTGGATCCGAGCAAGATCAAGGCTCAATCAAGGATTCTATTAATCAGCAGAACATCCAGATTGTTGAAGAGCAATATGGAGAGCAACAGGAAGAACAATATGAACAGGAAGAACAGATTGTCAAATTCGAACAAGAGCAGATTGTGAAGTTTGAGGATCCAGAAGAATATGAACAAGTGTATGAGCAGGAGTATGAAGAAACTTCGAGAGAGGCATCAGAGGCTACAGAGGTGATCATGAACATAGAAGATTCCAATGTGTACACGGAAGAAGTTACGGCCGACAATATGGAGCCTAGTCCTGAAATCATGACAGATGAAATTATGACGAACGATATTCTGCAATCCGGTACCGCTGTAGTGCATCTACAACGGCAGGACGATATGGGGAAGATTCAAGTGATACCTGTGATGCTATCCTTGCCTGATCTGTCTGACACGAATGCCGAAGTTAATCTCGCAACCGCGTCTATCGTGTATAAcaattag
Protein Sequence: MILKKMPNSEINKRDHNYSESEPPQNANNSNSSIINRESKMAPIVGQIKDIDELKKIAPRVRLQDAKSLNELTRISSLSNNSSKSQQSKVSVSERTQQELKKYCRTCAGLKLPLVDIFSEKGIKLRLSQQIKHLEVNPYDSLSTQMCMDCICDLKMSYKFFMQIKKAEVKLKSIHVNLTTDNVTKKVDPNNESLITKQIKQPSCLEIKQEHQSLFTIQENSSLSSTKQESQTIMKNQEDNSTPKICAIFSLNNESRMEEEEARVGGGIFEEIAEGEDEESIEEFDPEDPAFQEDEEEEEEFSRSPAAVYKYDMLAKSYVRVEGGEEVISMKSGISQTSEGEGDNQREGMRQPNILKRRLLMSTTTKNWEKDEVQNEMESTPRECKMQKLDLNNPLSVNNTSHEDGIMYVTVKGSKPNEILLVKVKKMDKPMESKRIASSTDLKPVERFLKRYEPLASRDSLSRLSDAREQIIEEQIEEYKKKREKVLGNQSAKTFTMNETQKEVQEEKIWTTSSPKKVEKEIIVSTKEDEEKEKEEDVGESEKVNESQEKVNDSTKEYILKLSREKLKWEEVKQKKESLQNQESDETYTESNLEKLMRILGEKEKNLQEFQEYLKQRKIVLTRLKDEDVISLYEERFSITLKLPPKPLPDVIEVQSSVNPLSMEPDLECDYCPETFSNRDILEEHLKVHDYRILHYCDDCEEEFPTNKAKRNHNVICVRKLICKYCDLLLDSRGKKRQHEQKHIDALYGQLCEVCGERFKHQGTLDQHLKTQHTILEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPIGNKRECPVCRKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMKVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNESMPGITRDESGPPEKKRVSCYHCNKTFKTEMILRTHIKNTHMEKDPMKCSDCDETFTSEVRLRHHMMVAHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNIKPKVRADDSSGSEQDQGSIKDSINQQNIQIVEEQYGEQQEEQYEQEEQIVKFEQEQIVKFEDPEEYEQVYEQEYEETSREASEATEVIMNIEDSNVYTEEVTADNMEPSPEIMTDEIMTNDILQSGTAVVHLQRQDDMGKIQVIPVMLSLPDLSDTNAEVNLATASIVYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01255001;
90% Identity: iTF_00868284;
80% Identity: -