Lnig010427.1
Basic Information
- Insect
- Lasius niger
- Gene Symbol
- Bgb
- Assembly
- GCA_001045655.1
- Location
- LBMM01010575.1:4476-5608[+]
Transcription Factor Domain
- TF Family
- CBF
- Domain
- CBF_beta domain
- PFAM
- PF02312
- TF Group
- Beta-Scaffold Factors
- Description
- Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.6e-29 1.4e-25 89.9 0.1 102 163 1 62 1 66 0.96
Sequence Information
- Coding Sequence
- ATGAACGGCGTGTGCGTGAGGTGGCGGGGTTGGATCGACCTGGACCGTCTCGACGGCGTCGGCTGCCTCGAGTACGACGAGGAGCGCGCCGCCGAGGAGGACGCGCTGCTGCGCGATCAGCTGGAGCGCTACAATCAGCGGCTGCGCGACTTCGAGGAGAAGCAGCGCGCCTATCGCACCGGCGCGGCCTCCGCCGCGCAACCGCCGCATCTGAACCATCACTATCACCACGACACGCATCACGCGGCGAGCCATCACCATCACCATCACGGCCACCACAGTAGACACGTGGGCGGCGCGGGCGCGACCGGCGCCACCGCCACCGGCATCGAGCCCCACCTGCCCCATCGGCAGGATCCCGAGATGGAGGTGCGACTGCGGGCCTACTGA
- Protein Sequence
- MNGVCVRWRGWIDLDRLDGVGCLEYDEERAAEEDALLRDQLERYNQRLRDFEEKQRAYRTGAASAAQPPHLNHHYHHDTHHAASHHHHHHGHHSRHVGGAGATGATATGIEPHLPHRQDPEMEVRLRAY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00385045;
- 90% Identity
- iTF_00867160; iTF_01244986; iTF_00264035; iTF_01228784; iTF_01423408; iTF_01422002; iTF_01422687; iTF_00385045; iTF_00126465; iTF_00127948; iTF_01405453; iTF_01406992; iTF_01408820; iTF_00109593; iTF_00765305; iTF_00182410; iTF_01077237; iTF_01015577;
- 80% Identity
- iTF_00867160;