Basic Information

Insect: Lasioglossum albipes
Gene Symbol: -
Assembly: GCA_000346575.1
Location: KB640132.1:10414-15616[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 6.6 8.2e+03 -3.2 0.1 28 40 85 97 85 100 0.64

2 5 1e-12 1.3e-09 37.8 0.0 1 39 324 363 324 367 0.90

3 5 3.1e-12 3.9e-09 36.2 0.1 2 39 379 416 378 419 0.94

4 5 1.1e-18 1.4e-15 56.8 0.0 2 45 434 478 433 478 0.97

5 5 1.3e-18 1.6e-15 56.7 0.1 1 42 485 527 485 528 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	6.6	8.2e+03	-3.2	0.1	28	40	85	97	85	100	0.64
2	5	1e-12	1.3e-09	37.8	0.0	1	39	324	363	324	367	0.90
3	5	3.1e-12	3.9e-09	36.2	0.1	2	39	379	416	378	419	0.94
4	5	1.1e-18	1.4e-15	56.8	0.0	2	45	434	478	433	478	0.97
5	5	1.3e-18	1.6e-15	56.7	0.1	1	42	485	527	485	528	0.97

Sequence Information

Coding Sequence: ATGTCCGAGGACATTTCACGCTACAACATTCTTCCGAAATTGTATTTCTGCAAGCTCGCTGTATCGTTCTGCACTGAACTTCAGTTTCTGCGAAACCGTCGCAGCCAATACAATTGGTCTAGAGAACGTCGGTCGTTATTGAAAACGGCAGATCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAGCAGGGACGGTCCGCCATCGGTGAGTCTGAGCTCGCCACCACGGGAACCGGGCACTCCCAGGATAAATTTCAGCAAGTTAAAGAGGCGGTACAAACGAGCGAGGACCACGTTCGAGCCTCGCGCAACGGATTCGAGGCACTACGACAGATACAAAGAGGAGGAATCGAACGGGAATTACAATCCGGAGAACAAAGAAAATCACAGAGACTGGCAGACCGAAGATGAAGATTGCACGGAGGCCACAACAGCAACAGTAGTCTTGGAAACGTGCCAACGGACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGATGAATCGGAGTGACATGTTCTGTCATACAGGTCTCGGACACTATGGACACCATCCGGATCCTGGGGAAGTCGATCTACCCCCAGAGACCCAGCCCACCCCACCTAGCGCCACATTGGTCGGCACTACGATCACCCACCTGAGGGATCCGGATCACCATTCCACAGAGATTCAGAACTGTGACAGTGTGAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACAATCGACATCGACAGCCACATGTCGGACCGGGCGAGTGTCAGTTCGAAGAACGCAGCGGACAGCGACAACATGATGATGATCACGCCGGAGCTGCTTGGTTTAATGCCCTCTGGAAGTTCCGTCCACTCGGATTCCGGTGAAAACAACTCGAGAGGCCATTCGGGACAGTCGAGCTCTCATCATCACGGTTCGAAATCGTGGACCCAGGAAGATATGGACGCCGCTTTGGAAGCTTTAAGGAACCATGACATGAGCTTGACCAAAGCCTCCGCAACCTTCGGCATACCATCGACGACATTATGGCAAAGAGCGCACCGGTTAGGCATAGACACACCAAAAAAGGATGGACCAACGAAATCGTGGAGCGACGAAAGCCTGAACAACGCCCTCGAAGCGCTGAGAACAGGCACGATCTCGGCTAACAAGGCGTCGAAAGCGTTTGGAATACCTTCGAGCACGTTGTACAAAATCGCGAGGAGGGAAGGCATCAGATTGGCTGCGCCGTTTAACGCCAGTCCTACCACATGGTCGCCCGCTGATCTGGACCGCGCTTTAGAAGCAATAAGGTCTGGTCAAACGTCTGTGCAGAGAGCTTCCACCGAATTCGGTATTCCAACAGGGACCTTGTACGGTAGATGTAAGAGGGAAGGAATCGAATTGAGCAGAAGTAATCCTACGCCATGGAGCGAGGATGCTATGACAGAAGCACTCGAAGCCGTCAGACTGGGACACATGAGCATCAATCAAGCAGCCATTCACTACAATCTACCCTATTCGTCGCTGTACGGCCGGTTTAAGAGGGGGAAGTACGAAGAACCCGCAGTCGGTGATCTATCACAAGACGGGAGCAATCAACATTTTCATCAAAGTCCGAATCAGAATCATTCGTCCGCCGTTCCCGATCAAATGCCCTACCAAGGCAGCTGA
Protein Sequence: MSEDISRYNILPKLYFCKLAVSFCTELQFLRNRRSQYNWSRERRSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRRYKRARTTFEPRATDSRHYDRYKEEESNGNYNPENKENHRDWQTEDEDCTEATTATVVLETCQRTXXXXXXXXXXXXXXXXXXXXSMNRSDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSNQHFHQSPNQNHSSAVPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00762466; iTF_00183858;
80% Identity: -