Basic Information

Insect: Augochlorella aurata
Gene Symbol: -
Assembly: GCA_028455555.1
Location: CM052164.1:16132505-16139969[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.7 6.9e+03 -3.2 0.1 28 40 86 98 86 101 0.64

2 5 5.6e-13 1e-09 37.8 0.0 1 39 320 359 320 363 0.90

3 5 1.7e-12 3.2e-09 36.2 0.1 2 39 375 412 374 415 0.94

4 5 6.3e-19 1.2e-15 56.9 0.0 2 45 430 474 429 474 0.97

5 5 7.2e-19 1.3e-15 56.7 0.1 1 42 481 523 481 524 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.7	6.9e+03	-3.2	0.1	28	40	86	98	86	101	0.64
2	5	5.6e-13	1e-09	37.8	0.0	1	39	320	359	320	363	0.90
3	5	1.7e-12	3.2e-09	36.2	0.1	2	39	375	412	374	415	0.94
4	5	6.3e-19	1.2e-15	56.9	0.0	2	45	430	474	429	474	0.97
5	5	7.2e-19	1.3e-15	56.7	0.1	1	42	481	523	481	524	0.97

Sequence Information

Coding Sequence: ATGACGGGGTTTTACCAGGAATATGCAAATCCGTCGACCTGTGCCTGTCTGACTAGTCCCTTCTTCTTTATTCCTCTTAGAAAGCGGTTTACTGGGATAGGTTATTCCTTATTTGGCGTCGAGCACGATCCACCGTCATTATTGAAAACGGCTGATCAGCTAAAAATCAAGGGCCTCTGCGAGGTGCCGGAGAGCAGGGACGGTCCACCATCGGTGAGTTTGAGCTCGCCTCCACGGGAACCAGGCACTCCCAGGATAAATTTCAGCAAGTTAAAGAGGCGGTACAAACGAGCGAGGACCACGTTCGAGCCTCGTGCAACGGATTCGAGGCACTACGACAGATACAAAGAGGAGGAATCGAACGGGAATTACAATCCAGAGAACAAAGAGAATCACAGAGACTGGCAGACCGAAGATGAAGATTGTACGGAGGGCACAACAGCAACAGTAGTCTTGGAAACGTGCCAACGGACCAATAATAATAACAACAACAACAATAACAACGGTAACGGTGCAAACAACAATAATAACGGTGACATGTTCTGTCATACAGGGCTCGGACACTATGGTCACCATCCAGATCCTGGGGAAGTTGACCTACCCCCAGAGACCCAACCCACCCCACCCAGCGCAACATTGGTCGGCACTACGATCACTCACCTGAGAGATCCGGATCACCATTCCACAGAGATTCAGAACTGTGACAGTGTGAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCAGACACGATCGACATCGATAGCCACATGTCGGACCGGGCGAGCGTCAGTTCGAAGAATGCAGCGGACAGTGACAATATGATGATGATTACACCGGAGCTTCTCGGTTTAATGCCCTCTGGGAGTTCCGTCCACTCGGATTCCGGTGAAAACAACTCGAGAGGACATTCTGGACAATCGAGCTCTCATCATCATGGATCGAAGTCGTGGACCCAGGAAGATATGGACGCCGCTTTGGAAGCTTTGAGGAACCATGACATGAGTTTGACGAAAGCCTCCGCAACCTTCGGTATACCATCGACGACGTTATGGCAAAGAGCGCATCGATTAGGCATAGATACGCCAAAAAAGGATGGACCAACGAAATCGTGGAGCGACGAGAGCCTGAATAACGCTCTTGAAGCGCTAAGAACTGGCACGATCTCTGCCAACAAGGCTTCGAAAGCATTCGGTATACCTTCCAGCACGTTGTACAAAATAGCGAGGCGGGAGGGTATTAGATTGGCCGCGCCCTTTAACGCCAGTCCCACTACTTGGTCGCCTGCCGATCTGGACCGCGCATTAGAAGCAATAAGATCTGGTCAAACATCTGTACAGAGAGCCTCTACTGAATTTGGTATTCCAACGGGCACCTTGTACGGTAGATGTAAAAGGGAAGGAATTGAATTGAGCAGAAGTAATCCCACGCCGTGGAGCGAGGATGCTATGACTGAGGCGCTCGAAGCCGTCAGATTGGGTCACATGAGCATCAATCAAGCAGCCATTCACTACAATCTACCTTATTCGTCGTTGTACGGTCGGTTCAAGAGGGGAAAATATGAAGAACCTTCAGTCGGTGATCTATCACAAGATGGTAGCAATCCGCATTTTCATCAGAGTCCGAATCAGAATCATTCGTCAGCCGTTCCGGATCAAATGCCCTACCAAGGCAGCTGA
Protein Sequence: MTGFYQEYANPSTCACLTSPFFFIPLRKRFTGIGYSLFGVEHDPPSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRRYKRARTTFEPRATDSRHYDRYKEEESNGNYNPENKENHRDWQTEDEDCTEGTTATVVLETCQRTNNNNNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPSVGDLSQDGSNPHFHQSPNQNHSSAVPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00141914;
90% Identity: iTF_00860297;
80% Identity: -