Basic Information

Insect: Halictus quadricinctus
Gene Symbol: -
Assembly: GCA_028454245.1
Location: CM052120.1:426629-431445[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 6.3 8e+03 -3.3 0.1 28 40 100 112 100 115 0.64

2 5 9.7e-13 1.2e-09 37.8 0.0 1 39 334 373 334 377 0.90

3 5 3e-12 3.8e-09 36.2 0.1 2 39 389 426 388 429 0.94

4 5 1.1e-18 1.4e-15 56.8 0.0 2 45 444 488 443 488 0.97

5 5 1.2e-18 1.6e-15 56.6 0.1 1 42 495 537 495 538 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	6.3	8e+03	-3.3	0.1	28	40	100	112	100	115	0.64
2	5	9.7e-13	1.2e-09	37.8	0.0	1	39	334	373	334	377	0.90
3	5	3e-12	3.8e-09	36.2	0.1	2	39	389	426	388	429	0.94
4	5	1.1e-18	1.4e-15	56.8	0.0	2	45	444	488	443	488	0.97
5	5	1.2e-18	1.6e-15	56.6	0.1	1	42	495	537	495	538	0.97

Sequence Information

Coding Sequence: ATGAAACCGTATCCGTCGGGGACGGAGCGTAAGGATGACGGGGTTTTACCAGGAATATGCAAATCCGTCGGCCTCTGCTCGTGCCTGGCTAGTCTCTTCTTCTTTATTCCCCTCGGATGCCGATTTACCGAGATAGGTTATCCCTTGTTTGGTCTCGTGCACGATCCGCTCTGTCCTTCACTATTGAAAACGGCTGATCAGCTGAAGATCAAGGGCCTCTGCGAGGTGCCGGAGAGCAGGGACGGTCCGCCATCGGTGAGTCTGAGCTCGCCGCCACGGGAACCAGGCACTCCCAGGATAAATTTCAGCAAGTTAAAGAGGCGGTACAAACGAGCGAGGACCACGTTCGAGCCTCGCGCTACGGATTCGAGGCACTACGACAGATACAAAGAGGAGGAATCGAACGGGAATTACAATCCGGAGAACAAAGAGAATCACAGAGACTGGCAGACCGAAGATGAAGATTGTACGGAGGGCACAACAGCAACAGTAGTCTTGGAAACGTGCCAACGGACCAATAATAATAACAATAACAACAATAACAACGGTAACGGTGCGAATAACAATAATAACGGTGACATGTTCTGTCATACAGGTCTCGGACACTATGGACACCACCCGGATCCTGGGGAAGTCGACCTACCCCCAGAGACCCAACCCACCCCACCTAGCGCCACGTTGGTCGGCACTACGATCACACACCTAAGGGATCCGGATCACCATTCCACAGAGATTCAGAACTGTGACAGTGTCAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACGATCGACATCGACAGCCACATGTCGGACCGGGCGAGTGTCAGTTCGAAGAACGCAGCAGACAGTGACAACATGATGATGATCACGCCGGAACTGCTCGGTTTAATGCCCTCTGGAAGTTCCGTCCATTCGGATTCCGGCGAAAACAACTCGAGAGGCCATTCTGGACAGTCGAGCTCTCACCATCACGGCACGAAATCCTGGACCCAAGAAGACATGGACGCCGCTTTGGAAGCGTTGAGGAACCATGACATGAGCTTGACGAAAGCCTCCGCAACCTTCGGCATACCATCGACGACGTTATGGCAAAGAGCGCACCGGTTAGGCATAGACACGCCAAAAAAGGATGGACCAACGAAGTCGTGGAGCGACGAAAGTCTGAACAACGCCCTCGAAGCGCTGAGAACTGGCACGATCTCGGCCAACAAGGCGTCGAAAGCGTTCGGTATACCTTCGAGCACGTTGTACAAAATCGCGAGGAGGGAAGGCATCAGATTGGCCGCGCCGTTTAACGCCAGTCCTACCACTTGGTCGCCCGCCGATCTGGACCGCGCTTTAGAAGCAATAAGGTCTGGCCAAACGTCCGTGCAGAGAGCTTCTACTGAATTCGGCATTCCAACAGGGACCCTGTACGGTAGATGCAAGAGGGAAGGAATCGAGTTGAGCAGAAGTAATCCCACGCCATGGAGCGAGGATGCCATGACAGAAGCGCTCGAAGCCGTCAGATTGGGTCATATGAGCATCAATCAGGCAGCCATTCACTACAATCTGCCCTACTCGTCGCTATACGGTCGATTCAAGAGGGGGAAGTACGAAGAGCCGGCAGTCGGTGATCTGTCGCAAGACGGGAGCAATCCACATTTCCATCAAAGTCCGAATCAAAATCATTCGTCCGCCGTTCCGGATCAAATGCCCTACCAAGGCAGCTGA
Protein Sequence: MKPYPSGTERKDDGVLPGICKSVGLCSCLASLFFFIPLGCRFTEIGYPLFGLVHDPLCPSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPPREPGTPRINFSKLKRRYKRARTTFEPRATDSRHYDRYKEEESNGNYNPENKENHRDWQTEDEDCTEGTTATVVLETCQRTNNNNNNNNNNGNGANNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGTKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDLSQDGSNPHFHQSPNQNHSSAVPDQMPYQGS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00306165;
90% Identity: iTF_00860297;
80% Identity: -