Lcon028096.1
Basic Information
- Insect
- Lapara coniferarum
- Gene Symbol
- -
- Assembly
- GCA_949316025.1
- Location
- OX438933.1:3851675-3853378[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-08 2.1e-05 25.0 0.0 7 37 24 54 18 62 0.82
Sequence Information
- Coding Sequence
- ATGccaagaaattataaaaaacgtATGGGGGcgagaaattataaaaattacagcTCCGAAAGTCTAAGACAATGTTTGGCTTCCATAGAAAATAAAGAATTAACGCAAAGAAAAGCCAGTGACAAGTATGGCATCCCACGCAGAACCATTGTTAATCAGTTAAGACTGCTACGAACTAAAATGCCATCTCGACCTCCAGGCGCTCCAACAACATTTACAAATGAAGAAGAAGCCTTGTTTGTCGATTGCATTTTAAGGCTGAGCGAGTACGGCTTTCCTCTCACAATTTTCGATCTTCGCATCGTTATTAGAACATATTTGGAGAAAATAGGTCGGACAGTTACAAAATTTAAAGATAATTGTCCAGGTACTGAGTGGGTGTCAAGTTTCCTAAAAAGACATTCTTGTTTATCACACAGATTTGCGACCAACATTAAACGCAACAGAGCAGCCATTAATAAGGAAATCATCACTGCCTACATAGAAAACTTGAAAGAGGTGGTTAGAGACATACCGCCCGAAAATGTATGGAATTTTGATGAGACTAGTTTATCCGATGATCCTGGTCAAAAAAAAGTAATAGCGAAGCGAGGCGCAAAATACCCCGAACTTATAAGTAATACCTCCAAAAGCTCAACTTCTATCATGTTTTGTGGTAGTGCTAAGGGTGAATTATTACCGCcatatattgtttataaatcaaAGCAACTATGGAGTACATGGACGGAACAAGGGCCAAAAGATGCCAGATTTAATAATAGCCCATCAAGTTGGTTTGACATGAACATATTTAGCGATTGGTTTTTTACACAAATTTTACCAATATTAAAGAAGCAAGAGGGTCCAAAAGTTATAATAGGAGATAACCTGTCATCTCACATTTCTGTAGACGTTCTAAAGGCCtgtgacaaaaataatattcgatttatttatttgccaCCTAATAGCACCCATCTAACTCAGCCGTTAGATGTTGCTTTTTTCCACCCAATGAAGGTAGCATGGAGAAAAATCCTGCCCGAGTGGAAGGCAAGTATACAAGGTAGTCGAGAGCAAGTGCTCCAAAAAAGCAATTTCCCAGTTCTGTTAAAGCGAATCATCGACATTTTGGAACCGACGCGGGAGGTAAACCTCGTCTCAGGTTTTCGAAAATGTGGAATTTATCCGCTTGATGCCAATCCATTATTAGAGAGGTTGCCTACAACTGTTGACCAGACTGCTTTGCAAGACTCTTTTCTACAGAGTCTTGAAGCTAAAAGGCTAGAATGGACGACAAGTGGAACTACAAAAGGCCGTCGCAGGAAACTACACATCACACCTGGAAAAAGTGTAACTGAAGAATTAAGCACACTTTTGGATGATAAAGAAAATGAAGAGTTGGCTCAGCCATCAACTTCAAAGCAACCATGTCGCCGTAGAGCCAGTAGCGAAAGCTCTTACGCAGAAAGTATCAACATATCAGTTCATGATTCTTCCGATCTTGGTTCTCTTGAAGATTTAGAAAATCTTGAAGCTAACACTGATACAGCGGTCGAAACTTGTGAggaaaattacaattttaaaccaaTTGTAAAGGCGGTGGGGCAATATGTAGTTTTCGCGTATGAGGGGGAAATGTTTCCtggtaaaattacaaaaataactaaaaaaaggGCCGTATATCTCTTCAATGAAGAAGTCTCTAAAATCCTGGACGTGGCCTAA
- Protein Sequence
- MPRNYKKRMGARNYKNYSSESLRQCLASIENKELTQRKASDKYGIPRRTIVNQLRLLRTKMPSRPPGAPTTFTNEEEALFVDCILRLSEYGFPLTIFDLRIVIRTYLEKIGRTVTKFKDNCPGTEWVSSFLKRHSCLSHRFATNIKRNRAAINKEIITAYIENLKEVVRDIPPENVWNFDETSLSDDPGQKKVIAKRGAKYPELISNTSKSSTSIMFCGSAKGELLPPYIVYKSKQLWSTWTEQGPKDARFNNSPSSWFDMNIFSDWFFTQILPILKKQEGPKVIIGDNLSSHISVDVLKACDKNNIRFIYLPPNSTHLTQPLDVAFFHPMKVAWRKILPEWKASIQGSREQVLQKSNFPVLLKRIIDILEPTREVNLVSGFRKCGIYPLDANPLLERLPTTVDQTALQDSFLQSLEAKRLEWTTSGTTKGRRRKLHITPGKSVTEELSTLLDDKENEELAQPSTSKQPCRRRASSESSYAESINISVHDSSDLGSLEDLENLEANTDTAVETCEENYNFKPIVKAVGQYVVFAYEGEMFPGKITKITKKRAVYLFNEEVSKILDVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091826;
- 90% Identity
- iTF_01331429; iTF_00122332; iTF_01091826; iTF_01331431; iTF_01331432; iTF_01331433; iTF_00164298; iTF_01331434; iTF_01331435; iTF_01331436; iTF_01331437; iTF_00290638; iTF_00640247;
- 80% Identity
- -