Esim026518.1
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- -
- Assembly
- GCA_947532085.1
- Location
- OX383930.1:30109951-30111774[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2e-07 8.4e-05 23.0 0.0 8 38 25 55 18 62 0.80
Sequence Information
- Coding Sequence
- ATGCCAAGAAATTATAAAAAACGTGTAGGGTCGAGAAATTATAAAAATTATAGCTCCGAAACTCTAAGAAATTGTTTGGCTTCCATAGAAAATAAAGAATTAACGCAAAGAAAAGCCAGTGAAAAGTATGGCATCCCACGCAGAACCATTATTAATCAGCTAAGACTACAACGATCTAAAATGCCATCTAGACCTCCAGGCGCTCCAACAACATTTTCAAGTGAAGAAGAATCCTTGTTTGTCGACTGCATTTTAAGGTTGAGCGAGTACGGCTTTCCACTCACAGTTTTTGATCTTCGGATCGTTATTAGAACATATTTGGAGAAAATTGGTCGGAGAGTTTCAAAATTTAAAGATAATTGTCCAGGTACGGAGTGGGTGTCAAGTTTCCTTAAAAGACATCCATGTTTATCACAACGATTTGCGACCAACATTAAACGCAGCAGAGCAGCCATTGACAAGGAAACCATCACTGCATACATAGAAAACTTGAAAGAGGTGGTTAGAGACATACCGCCCGAAAATATATGGAATTTTGATGAGACTAATTTATCCGATGACCCGGGTCAAAAAAAAGTGATAGCGAAGCGAGGCGCAAAATACCCCGAACTTATaagtaatacctccaaaagctcaacttctgtcatgttttgtggtagtgctaagggagaattattaccgccgtatgttgtatataaagccaagcaactaTGGAGTACATGGACGGAACAAGGGCCAAAAGATACTAGATATAATAATAGCCCATCAGGGTGGTTTGATATGAATATATTTAACGATTGGTTTTTTACACAAATTTTGCCAATTTTGAAGAAACAAGAGGGGCCGAAAGTTATAATCGGAGATAATTTATCATCTCACATTTCTGTAGACGTCCTAAATGCTTGTGACAAAAATAATATTAGATTTGTTTGTTTGCCACCTAACAGCACTCACTTAACCCAGCCATTGGATGTGGCTTTTTTCCACCCAATGAAGGTAGCATGGCGAAAAATCCTGACCGAGTGGAAGGCAAGTGTACAAGGTAGTCGAGAGCAAGTACTCCAAAAAAGCAGTTTCCCAGTTCTGTTAAACCGACTCACCGATATTTTGGAACGGACAAGGGAGGTAAACCTCGTTTCAGGTTTTCGAAAATGTGGAATTTATCCGCTTGATGCTAGTCCATTATTAGAGAGGTTGCCTACAACTGTGGACAAGACTGCTTTGCAAGACTCTTTTCTACAGAGTCTTGAAGCCAAGAGGCTAGAATGGACGACAAATGGAACTACAAAAGGACGTCGCAGGAAATTAAACATCACTCCTGGAAAAAGTGTAACTGAAGAATTAAGCACACTTTTGGATGATAAAGAAAATGAAGAGTTGGCTCAGCCGTCAACTTCAAAGCAACCATGTCGCCGTAGAGCCAGTAGCAAAAACTCTTACGCAGAAAGTGTCAACATGTCAGTTCATGATTCTTCCGATCTTAGTTCTCATGAAGATTTAGAAAATCTTGTAACTAACACTGATACAGCAGCCGAAACTTTCAAAAAAAATTGCAATTTCAAACCAATCGTGAAGGCGGTTGGGCAATATGTAGTTTTCGCATATGAGGGGGAAATATTTCCCGGTAAAATCACAAAAATAACTAAAGAAGGGCCATATATCTCTTCAATGAAGAAGTCGCTAAAATCCTGGACGtggcctaaacccgtagatgaaattcaatacgactggcaagatatattggggtgtattgatgtccctaaaaaaatgagtacccgccgggaaatatattccgttcctgaactgaccgcttgggatttttag
- Protein Sequence
- MPRNYKKRVGSRNYKNYSSETLRNCLASIENKELTQRKASEKYGIPRRTIINQLRLQRSKMPSRPPGAPTTFSSEEESLFVDCILRLSEYGFPLTVFDLRIVIRTYLEKIGRRVSKFKDNCPGTEWVSSFLKRHPCLSQRFATNIKRSRAAIDKETITAYIENLKEVVRDIPPENIWNFDETNLSDDPGQKKVIAKRGAKYPELISNTSKSSTSVMFCGSAKGELLPPYVVYKAKQLWSTWTEQGPKDTRYNNSPSGWFDMNIFNDWFFTQILPILKKQEGPKVIIGDNLSSHISVDVLNACDKNNIRFVCLPPNSTHLTQPLDVAFFHPMKVAWRKILTEWKASVQGSREQVLQKSSFPVLLNRLTDILERTREVNLVSGFRKCGIYPLDASPLLERLPTTVDKTALQDSFLQSLEAKRLEWTTNGTTKGRRRKLNITPGKSVTEELSTLLDDKENEELAQPSTSKQPCRRRASSKNSYAESVNMSVHDSSDLSSHEDLENLVTNTDTAAETFKKNCNFKPIVKAVGQYVVFAYEGEIFPGKITKITKEGPYISSMKKSLKSWTWPKPVDEIQYDWQDILGCIDVPKKMSTRREIYSVPELTAWDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091826;
- 90% Identity
- iTF_00859396;
- 80% Identity
- -