Sgig004294.1
Basic Information
- Insect
- Schoenobius gigantellus
- Gene Symbol
- -
- Assembly
- GCA_963935595.1
- Location
- OZ012540.1:52546085-52547908[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.4e-07 0.00013 23.7 0.1 3 36 20 53 18 64 0.78
Sequence Information
- Coding Sequence
- ATGCCCcgaatttataaaaaacgtttagggtcgagaaattataaaaattatacctCTGAAACTCTAAGACAATGTTTGGCTTCCAtagaaaataaagaattaaCACAAAGAAAAGCCAGTGAAAAGTATGGCATCCCACGCAGAACCATTATTAATCAGCTAAGACTCCAACGATCTAAAATGGCATCTAGACCTCCAGGCGCTCCAACAACATtttcaagtgaagaagaagccTTGTTTGTAGACTGCATTTTAAGGTTGAGCGAGTACGGCTTTCCTCTTACAGTTTTTGATCTTCGCATCGTTATTAGAAcatatttggaaaaaattggtCGGAGAGTATCAAAATTTAAAGATAATTGTCCAGGTACTGAGTGGGTGtcaagtttcttaaaaagacaTCCTTGTTTATCACAACGATTTGCGACTAACATTAAACGCAGCAGAGCAGCCATTGACAAGGCAACTATCACAGCATACATAGAAAACTTAAAAGAGGTGGTTAGAGACATACCGCCCGAAAATATATGGAATTTTGATGAAACTAATTTATCGGATGACCCTGGTCAAAAAAAAGTAATAGCAAAGCGAGGCGCAAAATATCCCGAGCTTATAAGTAATACATCCAAAAGCTCAACTTCTGTCATGTTTTGTGGTAGTGCTAAGGGAGAATTATTACCGCCGTATGTTGTATATAAATCCAAGCAACTATGGAGTACATGGACGGAACAAGGCCCAAAAGATGCCAGATATAATAATAGCCCATCAGGGTGGTTTGATATGAATATATTTAACGATTGgttttttacacaaattttGCCTATCTTGAAGAAACAAGAGGGTCCGAAACTTATAATCGGAGATAATTTGTCCTCTCACATTTCTGTAGACGTCTTAAATGCTtgtgacaaaaataatataagatttgtttgtttgccacCTAACAGCACTCACCTCACGCAGCCACTGGATGTGGCTTTTTTCCACCCAATGAAGGTAGCATGGCGAAAAATCCTGACCGAGTGGAAGGCAAGTGTACAAGGTAGTCGAGAGCAAGTACTCCAAAAAAGCAGTTTCCCAGTTCTGTTAAACCGACTCACCGATATTTTGGAGCCGACGCGGGAGGTAAACCTCGTTTCAGGTTTTCGAAAATGCGGAATTTATCCACTTGATGCTAATCCATTATTAGAGAGGTTGCCTACGACTGTTGACAAGACTGCTTTGGAAGATTCTTTTCTACAGAGTCTTGAAGCTAAGAGGCTAGAATGGACGACAAATGGAGGTAGAAAAGGGCGTCGTAGGAAATTAAACATCACTCCTGGAAAAAGTGTAACTGAAGAATTAAGCACACTTTTGGATGATAAAGAAAATGAAGAGTTGGCTCAGCCGTCAACTTCAAAGCAGCCATGTCGCCGTAGAGCCAGTAGTGAAAACTCGTACGCAGAAAGTGTCAACATGTCACTTCATGATTCTTCCGATCTTAGTTCTCTTGGAGATTTAGAAAATCTTGTAACTAACACTGATACAGCAGTTGAAACTTTCAATAAAAATTCCAATTTCAAACCAATCGTGAAGGCGGTTGGGCAATATGTAGTTTTTACATATGAGGGAGAAATGTTTCCtggtaaaattacaaaaataactaaagaaGGGCCATATATCTCTTCAATGAAGAAGTCGCTAAAATCATGGACGTGGCCTAAACCCGTGGATGAAATTCAATACCATTGGCAGGATATATTGGGATGTATTGATGTCCCTAAAAAAATTAGTACCCGCCGTGAAATATATTCCGTTCCTGAACTGACTGCTTgggatttttaa
- Protein Sequence
- MPRIYKKRLGSRNYKNYTSETLRQCLASIENKELTQRKASEKYGIPRRTIINQLRLQRSKMASRPPGAPTTFSSEEEALFVDCILRLSEYGFPLTVFDLRIVIRTYLEKIGRRVSKFKDNCPGTEWVSSFLKRHPCLSQRFATNIKRSRAAIDKATITAYIENLKEVVRDIPPENIWNFDETNLSDDPGQKKVIAKRGAKYPELISNTSKSSTSVMFCGSAKGELLPPYVVYKSKQLWSTWTEQGPKDARYNNSPSGWFDMNIFNDWFFTQILPILKKQEGPKLIIGDNLSSHISVDVLNACDKNNIRFVCLPPNSTHLTQPLDVAFFHPMKVAWRKILTEWKASVQGSREQVLQKSSFPVLLNRLTDILEPTREVNLVSGFRKCGIYPLDANPLLERLPTTVDKTALEDSFLQSLEAKRLEWTTNGGRKGRRRKLNITPGKSVTEELSTLLDDKENEELAQPSTSKQPCRRRASSENSYAESVNMSLHDSSDLSSLGDLENLVTNTDTAVETFNKNSNFKPIVKAVGQYVVFTYEGEMFPGKITKITKEGPYISSMKKSLKSWTWPKPVDEIQYHWQDILGCIDVPKKISTRREIYSVPELTAWDF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01091826;
- 90% Identity
- iTF_00859396;
- 80% Identity
- iTF_01331434; iTF_01331435;