Lole028024.1
Basic Information
- Insect
- Lacanobia oleracea
- Gene Symbol
- -
- Assembly
- GCA_950371165.1
- Location
- OX493401.1:24446313-24451007[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.1e-12 1.8e-09 38.6 0.0 4 39 148 184 145 188 0.89 2 2 0.00042 0.12 13.5 0.6 2 27 200 225 199 225 0.93
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCGCAAGTGAAATGCGAACCGCTCTCCGACGAAGAAGACAGCGACTCACAGTTCACGCACAGTTATTTATCCAGTCAGGGCAGTGGCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGCCCAGCCGCCACGCCGGTGTGTGTCAAGCAGGAGCGAGCCGAGTCACCTCCAGCTACCATATTGGAAACGCTCGAGTCTGCTCCTCATAATGCCAAGAGCACGTCACTGTTGGACCGTCACATGGACTTTATGAATGTCACCGAAGTGCCTGACTCCACCGACTTCATGCCTCTGCTGGCTGTCAAGGATGAACCCTCATCTGAAGGTGAACAACCACACCTTAGCGGAGAAGACACTAGCGACTCCTGCGGCCGCCAAGCATCGCCTGCACCACGACACAGCCCCAAGAGTTGGACCCAGCAAGACATGGAACGAGCCCTGGACGCTCTTAGAAACCACCAGATGAGCCTTACAAAGGCATCAGCAACGTACGGCATCCCGTCCACCACACTCTGGCAGCGCGCGCACCGGCTCGGCATCGACACGCCCAAGAAGGAGGGAGCCGCCAAGTCCTGGAGCGAGGCGGACCTGCGAGGGGCTCTGCACGCGCTTAGGGCGGGCGCTATCTCCGCTAATAAGGCCAGCAAAGCTTATGGTTACATAGGAGAAACGAAGATAGctacaaaagtaaaaactgTGGCGCAGCTATCAGCGCCCAATTCAAGATACATGGAATCAGAGATTGTTCCAGATTAA
- Protein Sequence
- MPGHGLSQVKCEPLSDEEDSDSQFTHSYLSSQGSGLEELAPLAPAGPAATPVCVKQERAESPPATILETLESAPHNAKSTSLLDRHMDFMNVTEVPDSTDFMPLLAVKDEPSSEGEQPHLSGEDTSDSCGRQASPAPRHSPKSWTQQDMERALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGYIGETKIATKVKTVAQLSAPNSRYMESEIVPD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00172648; iTF_00822834; iTF_00281055; iTF_00821705;
- 90% Identity
- -
- 80% Identity
- -