Hscr021099.1
Basic Information
- Insect
- Hypercompe scribonia
- Gene Symbol
- -
- Assembly
- GCA_949316085.1
- Location
- OX438983.1:1142407-1150855[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-11 4.4e-09 36.9 0.0 4 39 147 183 144 187 0.89 2 2 0.0004 0.1 13.4 0.6 2 27 199 224 198 224 0.93
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTGGCAAGTGAAATGCGAGCCACCGTCTGACGAAGAAGATAGTAATTCGCAGTTCGCGCGCAATTATCTATCTAGTCAGGGCAGTGGTCTGGAAGAGTTGGCACCGCTGGCGCCAGCGGGGCCTGCAGCTACGCCAGTATGTGTCAAACAGGAACGAGCCTCACCCCCAGCCACTATGCTGGAGACTCTGGAGTCGGCACCGCATTATGCCAAGGGCACGTCGTCGTTACACCATCACAGGATTGCAATGAACGTTGGAGAAGTGCCAGACTCCAGAGACTTTGTTCCACTCTTAACCGTTAAAGATGAACCATCGTCCGAAGGAGAACAACCTCAACTGAGTGGTGAAGACACAAGCGACTCATGCAGCAGACAAACGTCGCCAGCTCCTCGGACCAGCCCCAAGAGTTGGACGCAACAAGACATGGAACGAGCGCTGGACGCACTTCGGAAGCACCAGATGAGTCTTACTAAGGCGTCAGCTACTTACGGTATCCCTTCGACAACGCTGTGGCAGCGAGCTCACCGCCTCGGCATTGACACGCCGAAGAAGGAGGGCGCGGCCAAGTCCTGGAGTGAAGCCGATCTACGCGGGGCCCTTCACGCGTTGAGAGCAGGTGCTATATCTGCCAACAAAGCCAGCAAGGCTTACGGCAACGTGGAAGATCAAAggtgtatattatgtaaagcaCGGGCCCCAGAACTGAACCCTGCGGCACACCACTGTGAACTTGGCGGGGATTTGAAAAGGTTTCGCCTACACGCACTGTCAAGGTTTTTTGTTGTAAGAACGCCGCAATCCACGTGA
- Protein Sequence
- MPGHGLWQVKCEPPSDEEDSNSQFARNYLSSQGSGLEELAPLAPAGPAATPVCVKQERASPPATMLETLESAPHYAKGTSSLHHHRIAMNVGEVPDSRDFVPLLTVKDEPSSEGEQPQLSGEDTSDSCSRQTSPAPRTSPKSWTQQDMERALDALRKHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGNVEDQRCILCKARAPELNPAAHHCELGGDLKRFRLHALSRFFVVRTPQST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00850545;
- 90% Identity
- -
- 80% Identity
- -