Acen039131.1
Basic Information
- Insect
- Atethmia centrago
- Gene Symbol
- -
- Assembly
- GCA_905333075.2
- Location
- HG995384.1:1771158-1783229[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 8.3e-12 2.4e-09 38.6 0.0 4 39 148 184 145 188 0.90 2 3 1.7e-10 4.9e-08 34.4 0.3 2 39 200 237 199 241 0.92 3 3 2.6e-08 7.6e-06 27.3 0.4 2 31 255 284 254 285 0.93
Sequence Information
- Coding Sequence
- ATGCCCGGCCACGGACTGTCGCAAGTGAAATGCGAACCGCTCTCGGACGAAGACGACAGCGACTCACAGTTCGCGCACAGTTATCTATCCAGTCAGGGCAGTGCCTTGGAGGAGCTGGCACCGCTGGCGCCGGCGGGTCCGGCTGCCACGCCCGTATGTGTCAAGCAGGAGCGAGCCGAGTCACCACCAGCTACCACGCTTGAGACGCTCGAGTCAGCACCACATAATGCCAAGAGTACGTCCCGGTTGGTTCGGCACATGGAGTTCATGAACGTCACCGAAGTGCCTGACTCCAGTGACTTCATGCCGCTGCTGGCTGTCAAGGATGAACCCTCGTCTGAAGGTGAACAAACACACCTTAGCGGTGACGACACGAGCGACTCCTGCGGCCGGCAAGCTTCGCCCGCGCCACGACACAGCCCCAAAAGTTGGACCCAGCACGACATGCAACGAGCTTTGGACGCTCTAAGAAACCACCAGATGAGCCTTACGAAAGCATCAGCAACATACGGCATTCCATCCACCACGCTCTGGCAGCGAGCACACCGGCTGGGCATAGACACACCCAAGAAGGAAGGAGCTGCCAAGTCCTGGAGTGAGGCTGATCTGCGAGGGGCTCTGCATGCATTGAGAGCAGGCGCTATCTCCGCTAATAAAGCCAGTAAAGCTTATGGCATTCCCAGCAGCACTCTGTACAAGATAGCTCGGCGGGAAGGCATCCGCCTGTCGGCGCCGTTCAACGCGGCGCCCACGGCGTGGCGGCGCGCCGACCTGGCGCTGGCGCTGGCGGCCATCCGCGGCGGCGCCAGCTCCGTGCAGCGCGCCGCCGCGCAGTACGGGATCCCCACAGGTAGCTCCCGGTGTTTGTTCACATCATCTGTCTTACAATCGATAAAGTTTAGCTAG
- Protein Sequence
- MPGHGLSQVKCEPLSDEDDSDSQFAHSYLSSQGSALEELAPLAPAGPAATPVCVKQERAESPPATTLETLESAPHNAKSTSRLVRHMEFMNVTEVPDSSDFMPLLAVKDEPSSEGEQTHLSGDDTSDSCGRQASPAPRHSPKSWTQHDMQRALDALRNHQMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGAAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLSAPFNAAPTAWRRADLALALAAIRGGASSVQRAAAQYGIPTGSSRCLFTSSVLQSIKFS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00850545;
- 90% Identity
- -
- 80% Identity
- -