Hcos013526.2
Basic Information
- Insect
- Hypsopygia costalis
- Gene Symbol
- -
- Assembly
- GCA_937001695.2
- Location
- CAKZJU020000238.1:290130-301274[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0047 0.49 12.2 1.0 3 23 208 229 207 229 0.96 2 22 0.044 4.5 9.1 0.6 1 22 609 630 609 630 0.95 3 22 6.6 6.8e+02 2.3 0.3 1 22 672 693 672 695 0.82 4 22 0.0015 0.15 13.8 0.9 2 22 705 725 704 725 0.94 5 22 0.0059 0.6 11.9 0.1 3 23 775 796 773 796 0.96 6 22 0.004 0.41 12.4 4.3 1 23 802 825 802 825 0.95 7 22 0.12 13 7.7 0.0 1 23 851 874 851 874 0.90 8 22 0.0054 0.55 12.0 3.5 1 23 879 901 879 901 0.97 9 22 0.017 1.7 10.5 0.2 1 23 907 930 907 930 0.95 10 22 0.0023 0.23 13.2 1.3 1 23 943 965 943 965 0.97 11 22 0.00017 0.018 16.7 1.8 1 23 1015 1038 1015 1038 0.97 12 22 0.0083 0.85 11.4 1.1 1 23 1100 1123 1100 1123 0.96 13 22 0.00091 0.094 14.4 2.0 2 23 1150 1172 1149 1172 0.95 14 22 0.086 8.8 8.2 0.1 2 23 1178 1200 1177 1200 0.93 15 22 0.0097 1 11.2 0.2 1 21 1243 1263 1243 1264 0.95 16 22 0.0012 0.12 14.0 0.6 1 23 1274 1296 1274 1296 0.93 17 22 8.7e-05 0.0089 17.6 0.3 2 23 1389 1411 1389 1411 0.93 18 22 1.8e-07 1.8e-05 26.1 1.1 3 23 1418 1438 1417 1438 0.98 19 22 0.023 2.3 10.0 1.0 1 23 1457 1479 1457 1480 0.94 20 22 0.32 33 6.4 0.0 1 23 1501 1523 1501 1523 0.97 21 22 0.029 3 9.7 0.6 1 23 1529 1552 1529 1552 0.95 22 22 0.00027 0.028 16.1 0.8 1 23 1560 1583 1560 1583 0.97
Sequence Information
- Coding Sequence
- atGAGCGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTATTGCCGATTTTTCCTACCACCAGTTCGGATGACTCTGAACCTCCCATCCTCGTAACGAAAATTAAGGATTGTGTCTCTGTGCAGATAAGCGAAAATGACGACCTGCCAACGAATGTTTGCAGGAAATGCATGGACAATGTGAATAACTGGCACATATTTAAGTCAGTTTGTGAGAGGGCACAAAACAAACTAGAATCTCTGATAAAAAAAGATGGCAACCAACTAGAAGAGgtgcaaataaaaaatgaaCCATTGTCTGATGAGGCCTATGATGATGGAGTGGTTATTGATGGAGGATACCCTGACAGTGAGAATGCAGCGAATATTGGAAAATTGCAGCCAGAAGGCCCACCGATCTTGGCTTCGTTGGGACTCACACCGCGGAGTGATAAGGGCATGGAGAGTGATAAAGAGgaagaggaagaagaagatGAAGACGTAAACGAATCAGGCCAGTCTTTCTCGAACATTCCTGCTATGCCAGAGGTATCAATCACAGTTATGCGTCCCACCGGTGAAACTTTACACGCTCGTCAAGGTATCCAACAACTTGCATCCAAAGATTGTCTTGTATGCGGCCGTTCTTATAGATATTCTCATAATGCTAGACGACATGAGCTCACTGCTCATAGCtttgatagatatacaaataaaattaccaGCAAAAAGTCGCGTATGCAACCTAAGCTACGACCGAATCCATTCAATCCTAAAGCGCGTTTGTTGCCGAGTCATAAAATGCATATCCCTAAACCGGTACCAAAATTAATGCCTCACAAGATCATTGCTCCACCAAAACCAATTCTAGTAAAATCGACGAAAGGTCCTCAAAATAACTTACCTTATCCGCTTAGGATTAAAGCACTTAaagatttacaaataaaaaaaaaagaacctcaaatattaaaaacattattaacTGCTAAACCTGAAGTCCTCGTATCAGagcctgaaattattaattcgGGACCAGAGAGCCCAGAAACGTTAATATCGGAACCAGAAATCTCTTCATTCCAAGTAGAAACAATTTTGTCTGAACCGGATGCTTTTGAAGGCGGGCAAGGTGGAGAAGAAGGTGAAGGGGAAGATAACAATCAAAATCAACAGTACGATACTGTGGACATGGATTCTGAGAATGAGATAGAAATCGCTCGACAGCAAGAAAATGATGCAGAGGAAGATGATAATATCGGTGATCAAGACGCCGAAGAAAACATACATCAGCAAGATGAAAATAATATGGAAGAAGCTCATGATGAAAACGAAAAGGAAAATGTAGACGTCGCCGATAATGGAGCAAACGAAGAAAATATGGAATTGGATGAGAACATGGAAGGCGGAGGTGAAATTGACGACAAAGGCGATGTGGATAACGAGGAAAGAGAAAATGACGAGCAAGAAGTAAATCACGAAGGAAATGAAGAAGAAGACGATGATCTTCCTCCCATAGGGTTGGCACCTGTTGTTGAAATAAATGAAGACATGCAAACTAACTCGTATAATAGCGAATTGAACGAAGAGGAAGAAGAACaagaagatgttgatgaaacaaaTGAACTTAATGAAAATGAAGGTGATGAATCAATGAAAGAACTAGACCCTGATAAACTTTATGTAACTAAGACACAAAGGGACTTTATTGCGAAGTATCGTGATATTATTCAACAAATAAACACCAAAGTATGTCTTTGTTGCGATAGAGAACATCCTCGTCGTAAAGCTGTAATccaacatttacaaaaaaatggacATAAAGTTCCTAAGCACACATGTTATAATTGTGTTGTTACTTTTAGTCATATAGGAGCATTATTAAGTCATATGCGGTCTAATACTTGCACGGATTTGTGGAAAATTATCTACAATGAAAGCGGTATTACTGAGGATATGGTTTTGGAGGATGAACCTAAGGACACTAAAGTACAGTACAAAGATATCTTCAATGCAAGATCTTATGCTTGTAAGTTGTGCCCAGCAAAATTCCAACTAAAACAGTTTATAATGAAACATGTATTAGATGTCCATGAAGATGGTCAGTCTAGAGTTCCATTAGTGTGTGTGCACTGTGGATCCAGGTTTAAGGACAAGAGTTTAATAAAGAAACACATCCGTAAAGGGGAATGCACAGTATACATTTCTTGTGACTTGTGTGCAGAGAAGTTTTTAAATATGCAGGATTTCAATGATCATGCTTTGGCAGTGCACGCTGGAAGCTTTGACCCTGATAATGAAAATAAGTGTGTTGATGGACGACCAACTGATTGTCCTATATGCGGAAAGAAAAATAGCAGCTATCCAAATTTGGTAAAACATCTCAAAATAATACACAACGAAGAAAAACCTCATTATTGCAAACATTGTGATTTGAAATATGAACATGCTGCTGatcttaataaacatatttatatgGAACACTCTGATAGATCTTTGGGCGTACAAAATTCCGATGTGGATATGTCGTTGGTCAAAGAAGAAGCTGAAGAGTATCATTACTCTTGCACAGAATGTAACGCCATATTTGAAACTGTCGATGCTTGGACTGACCATCAGGTAGCTGAACATAATCAAGTTGCTCATCACTGTGATCAATGTGATAAAAAATTCTtgcgtccctctgagctagctgAACACAAAAACACTCATTTGCGTGTGAAATTTTACCCATGCAGTGTGTGCACTAATTCGTACAGTACTCCCCAAAAATTGTCTGATCATGTCCAACAAGCACATCCAGGAGCAGCAGCGTACGCGCCTACAGATTCTGAATTCTTCTGTGACATTTGTATTAGATCTTTCAAAAGTCGTCAAGCGTATTCCAATCATATGCGTATTCACGCTAAAGTACCTACCACAAACAGGAAACCTGGCGAACCTAGAGGTTTTGCCCCACAAATTATTGGTAAACCTATTAGGCAGTTTCCAACTGTGCAACCACAACCTAATTTTGTTTTCAAGCCAAATTGTAATGTTCCTAACGCACCATATTCTTGTGATATATGCGGTAAAGGCTTTAtgcataagaaaaatatttggaaaCACAAAAAAGTTTTGCATGCTGATCTGCTTAATGAAAGAAATGATAGTGAAGAAAATACTATGCATGCTTCAACTGAAGAAGATGATTATAATGTTGATGAAAATGGTTCCATTTTATCTACACCGCAATTTAACAGTTTCAATTTCGCTAATTTCGCCAACAATGCTCAACAACAACAGGTTCAAGAGGATCCTATGCCTTACTCTTGTGAACTTTGTTTAAAACGATTCCCACTTAGGACTAGCTTATGGAAACACAAACGCGCTAAACACGGAATCATTAATGCCAGTGCAAGTGGCAGCTCGGACGCCTTAACTCACGCATCACCGAGTGAAGGCAGCAGCAGATCTAGTTGCACGATATGTAAGATAAGTTTTTCtgataaaaaatcttattatcGCCACAGAAAAAATGTACACAAGTCTTCTACACAGATGTGCAAAATATGTGGCAAACCATTAAACTCTACACTAGAACTATACGAGCATTTAAAAGCTGCCCATGCACGTGAATTATTAGGATATAATGACAATCAAGGGCCTAGTAAGTCTCAAGATATGAAGCAAGAAATGGAacttgaatatgaaaatgagCAAGATACAGCAGATCCTAATGATTACCAAGCTCGCTATCCATGCGATACGTGTGGTAAACAATTCGTGGGCTTACTGGCCTTACAAAATCACCAGTGTATCAATCAAGTGCAATCACAACCACAGACGTTCGACTGTGAGATTTGTCATAAGAGTTACACATCTATAGCAGCTCTAAAAAGCCATCGCGGTTGGCATTTGCGTTCACCTGACGGGAAAGCCGCCGCTAATAACACTGGATTATGGATGCCACAGAATAAGGTCACTAGCAAAGTTAGTAAATTTGAAGTTGTGGATGCCGCTCAATTTGCCCGCGTCCAACATTCCACTCCAATGCCACCAGCTCAAGTAGCTAAAAGGAGGTTGCCTCCTGAAGTAGAGGTTACTGTCGTGAATCCGAATAAGAAAATGCGCTCAGACGATTCTGTCGAAATGGAACAGCAGAGTAATTTATCGGGTGGATTGGAGGATCGTTATTGTAACATTTGCGATAAGGAGTTCACCAAACGAGCTGCTTATCAGCGTCATATGGATGAGGTTCATCAGCCTAACTCTGTATTTTGTCCAGTGTGTGACAAAAGTTTCACACGTAAATCAACGTTAATCGTTCATATGAAGAAACATTATGAAGGCGGTCAGGGCAGTTCTGGGGGCTCAGCTCATATTGACGAAGAGACTCACTCGTGCGATCTATGCGGCGCACAGTACGATAGCGAGAATGCTTTGAGAGCACATCGTGCTAGACACCACGGAGAAGAATCTGAGGAATCAGACGATGACGGGAACGTGCCCATCGCTCCTCCGGGCGAATTCACCTGCGCGCAATGCGGTGACGGTGTCGCCAGTCCACGGGACTTGATCACTCACCGTACAATGCACGCGACGCCATCTAGGTTCTTCTGCAATATTTGCAAGGTATACTTTGTGAGGGCTTTGGACTTGTCTTCGCATACAAGGGCGAGACATGCTGACaatgaaaaagtttttttcccGTGTGCCATGTGTGATCGTTTCTATATGAACAAGAAGAGTTTACAACGGCACATTGATACCTCTCATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPILVTKIKDCVSVQISENDDLPTNVCRKCMDNVNNWHIFKSVCERAQNKLESLIKKDGNQLEEVQIKNEPLSDEAYDDGVVIDGGYPDSENAANIGKLQPEGPPILASLGLTPRSDKGMESDKEEEEEEDEDVNESGQSFSNIPAMPEVSITVMRPTGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITSKKSRMQPKLRPNPFNPKARLLPSHKMHIPKPVPKLMPHKIIAPPKPILVKSTKGPQNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVSEPEIINSGPESPETLISEPEISSFQVETILSEPDAFEGGQGGEEGEGEDNNQNQQYDTVDMDSENEIEIARQQENDAEEDDNIGDQDAEENIHQQDENNMEEAHDENEKENVDVADNGANEENMELDENMEGGGEIDDKGDVDNEERENDEQEVNHEGNEEEDDDLPPIGLAPVVEINEDMQTNSYNSELNEEEEEQEDVDETNELNENEGDESMKELDPDKLYVTKTQRDFIAKYRDIIQQINTKVCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNTCTDLWKIIYNESGITEDMVLEDEPKDTKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPLVCVHCGSRFKDKSLIKKHIRKGECTVYISCDLCAEKFLNMQDFNDHALAVHAGSFDPDNENKCVDGRPTDCPICGKKNSSYPNLVKHLKIIHNEEKPHYCKHCDLKYEHAADLNKHIYMEHSDRSLGVQNSDVDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCTNSYSTPQKLSDHVQQAHPGAAAYAPTDSEFFCDICIRSFKSRQAYSNHMRIHAKVPTTNRKPGEPRGFAPQIIGKPIRQFPTVQPQPNFVFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNERNDSEENTMHASTEEDDYNVDENGSILSTPQFNSFNFANFANNAQQQQVQEDPMPYSCELCLKRFPLRTSLWKHKRAKHGIINASASGSSDALTHASPSEGSSRSSCTICKISFSDKKSYYRHRKNVHKSSTQMCKICGKPLNSTLELYEHLKAAHARELLGYNDNQGPSKSQDMKQEMELEYENEQDTADPNDYQARYPCDTCGKQFVGLLALQNHQCINQVQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNTGLWMPQNKVTSKVSKFEVVDAAQFARVQHSTPMPPAQVAKRRLPPEVEVTVVNPNKKMRSDDSVEMEQQSNLSGGLEDRYCNICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGQGSSGGSAHIDEETHSCDLCGAQYDSENALRAHRARHHGEESEESDDDGNVPIAPPGEFTCAQCGDGVASPRDLITHRTMHATPSRFFCNICKVYFVRALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIDTSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01302597; iTF_00640669; iTF_00651966; iTF_00651969; iTF_00651970; iTF_00651967; iTF_00651968;
- 90% Identity
- -
- 80% Identity
- -