Esim006554.1
Basic Information
- Insect
- Elegia similella
- Gene Symbol
- -
- Assembly
- GCA_947532085.1
- Location
- OX383932.1:21225500-21234871[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.05 3.8 9.0 1.4 3 23 208 229 207 229 0.96 2 23 0.34 26 6.4 0.3 1 22 609 630 609 630 0.95 3 23 6.7 5.1e+02 2.3 0.3 1 22 672 693 672 695 0.82 4 23 0.0033 0.25 12.7 0.7 3 21 706 724 704 725 0.94 5 23 0.25 19 6.7 0.2 2 23 733 755 732 755 0.89 6 23 0.0044 0.34 12.3 0.1 3 23 776 797 774 797 0.96 7 23 0.0028 0.21 12.9 1.7 1 23 803 826 803 826 0.95 8 23 0.12 9.5 7.7 0.0 1 23 851 874 851 874 0.90 9 23 0.0054 0.41 12.0 3.5 1 23 879 901 879 901 0.97 10 23 0.011 0.83 11.1 0.2 1 23 907 930 907 930 0.95 11 23 0.00016 0.013 16.8 1.3 1 23 944 966 944 966 0.97 12 23 0.00018 0.013 16.7 1.8 1 23 1014 1037 1014 1037 0.97 13 23 0.0016 0.12 13.7 1.7 1 23 1099 1122 1099 1122 0.96 14 23 0.0011 0.083 14.2 2.1 2 23 1147 1169 1146 1169 0.95 15 23 0.086 6.6 8.2 0.1 2 23 1175 1197 1174 1197 0.93 16 23 0.0098 0.75 11.2 0.2 1 21 1242 1262 1242 1263 0.95 17 23 0.0012 0.093 14.0 0.6 1 23 1273 1295 1273 1295 0.93 18 23 0.00011 0.0085 17.3 0.3 2 23 1388 1410 1388 1410 0.93 19 23 1.8e-07 1.4e-05 26.1 1.1 3 23 1417 1437 1416 1437 0.98 20 23 0.0026 0.2 13.0 1.3 3 23 1456 1476 1455 1477 0.94 21 23 0.18 14 7.2 0.0 1 23 1499 1521 1499 1521 0.97 22 23 0.027 2.1 9.8 0.6 1 23 1527 1550 1527 1550 0.95 23 23 0.00014 0.011 17.0 0.5 1 23 1558 1581 1558 1581 0.97
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCGACAAAAATCAAGGATTGCGTCTCTGTACAGATAAGCGAAAATGACGACCTGCCAACTAAAGTCTGCAGAAAATGCATGGACAATGTAAACAACTGGCACATATTTAAGTCAGTATGTGAAAGGACACAAAACAAACTAGAATCTCTGATAAAAAAAGATGGCAACCAACTAGAAGAGGTGAAAATTAAAAGTGAGCCACTTTTTGATGAGGCTTATGATGATGGAGTGGTTATTGATGGGTCATACCCTGATGGTGAGAATGCCAGCAGTTCAGCAAAAATACAGCCAGAAGGCCCACCAATCTTGGCTTCGCTGGGGCTCACACCAAGGAGTGATAAGGGTATGGACAGTGAAAAGGAGGAAGAGGAAGAAGAAGACGAAGAGATGAACGAATCGGGGCGGTCGTTTTCCAGCGTACCAGCCATGCCCGAGGTGTCTATCACGGTAATGCGGCCCAGCGGCGAGACGCTGGCCGCCAAGCAAGGCATCCAGGCGCTGGCCTCCAAGGACTGCCTGGTCTGCAGTCGCTCCTATCGCTACAGCCACAACGCGCGCCGCCACGAACTCACAGCGCACAACTTCGACCGCTATACTAACAAGGTCTCCGCCAAGAAGTCTTTCGCGCAAATGCAACCCAAGCTCCGACCCAATCCCTTCAATCCAAAGGCCCGCCTGATGCCGAGCCACAAGATGCACCTCATTCCCAAACCAGTCCCCAAGTTGATGCCGCACAAAATAATCAACCCGCCGCAACCTGTTCTAATCAAAAAAGGACCGCAAAACAATTTACCTTATCCGCTTCGTATCAAGGCATTGAAGGACTTGCAAATAAAGAAAAAAGAACCGCAGATGCTCAAAACGTTACTCACGTCTAAACCGGAGATCTTGACCTCCGAGATCGACATCGCAAATTCGGAACCTGAAAGCCCTGAAACCTTGATTTCTGAACCTGAAATTGCTTCATTTCAAGTTGAGGCTATACTGTCCGAACCTGATGCTTTCGATCAGCCGCAAGGCGAAGAAGACGTTGAAGGTGAAAGGGAAGAAACAAATCAAAGTCAGCAGTATGACACTGTAGATATGGATTCTGAAAATGAGATTGAAATTGCTCGACAGCAAGAAAATGAAATAGAGGATGATGATCATAATGTAGACAATGACAATGAAGATAACATGCAGCACGATGACGAAAATAATATAGACGGGGCTCAAAGTGAAACAGAAAAAGAGCTTCTTGAGGAAAATGGCGAACTTGACGAGAATGCAGAGAAAGAAGAAAATGTTGAAAATAAAATTGAAGAACCGGAAGAGAGTAAAGAAGTCGAGGGAGAGGACGATGGTGAACATGAGGAACAAGAAGTAAATCATGACGATAATGAGGAGGAGGAGGACGAGGACATGCCTCCCATGAGCTTGGCACCTGTTGTGGAAATAAACGAGGACATGCAAACCAATTCATACAACAGCGAGGTGAATGAGGAAGAAGAAGAACTGGACGAGACTGCCGATCTCAATGAAACAGAAGAAGAACCAGTCAAAGAACTGGACCCAGACAAAATTTATGTAACCAAAACGCAAAGAGATTTCATTGTTAAATACAGGGACATAATTCAGCAAATCAACACAAAGGTATGCCTTTGCTGTGACCGCGAACATCCACGGCGAAAAGCAGTCATACAGCATTTGCAGAAAAATGGACATAAAGTCCCGAAACACACCTGTTACAATTGCGTCGTTACCTTTGGACACATTGGCGCACTGCTCAGTCACATGCGATCTAACACTTGCACAGACTTGTGGAAAATTATTTACAATGAGAGTGGTATAACTGATGAAATGGTTCTAGACGATGAACCTAAGGAAGCCAAAGTTCAATATAAAGATATTTTCAATGCAAGGTCGTATGCTTGCAAATTGTGCCCGGCGAAGTTCCAACTCAAGCAGTTCATTATGAAACATGTGCTGGACGTACATGAGGATGGCCAGTCAAGAGTTCCAATGATTTGCGTCCACTGCGGCTCGCGATTCAAAGATAAGAGCTTAATAAAGAAACATATACGCAATGGAGACTGCACGGTATACATTTCATGCGACTTATGTTCGGAGAAGTTTTCCAACATGCAAACGTTCAACGACCACGCGTTGGCTGTACACGCGGGAAATTTCGAGCCGTCTGATAATCAGAATCAGTGCGTTGATGGCCGCCTTACGGATTGTCCTATCTGCGGAAAGAAGAACAGCAACTACCCTAATTTGGTCAAACATTTGAAGATAATACACAATGAAGAAAAACCACATTATTGCAAACACTGTGATGCCAAATTCGAGCAAATCGCCGATCTTAACCAACATATCTATATGGGGCATTCTGATAGAGGAATGAGTCTCAGTAGCGAGCCTGACATGTCGCTCGTGAAGGAAGAAGCTGAGGAGTACCACTACTCGTGTACTGAATGTAACGCCATATTCGAGACTGTGGACGCTTGGACTGACCATCAGGTGGCCGAGCACAATCAGGTCGCGCACCACTGCGATCAATGCGACAAGAAGTTCCTGCGACCCTCGGAACTCGCCGAACATAAAAATACTCACTTGCGGGTGAAGTTCTACCCCTGCAACGTGTGCACGAACTCTTACAGCACGCCGCAGAAGCTATCAGAGCACGTGCAACAAGCGCACCCTGGAGCAGGCGCAGCATTGCCCACTTTGGAGAACGAGTTCTTCTGTGACATTTGTGTTAGGTCCTTCAAGAGTCGCCAAGCGTACTCTAACCATATGCGTATACACGCGAGAGTCCCCACTCACAACAGGAAACCCGGTGATCCCAAAGGTTTCTCGCCACAAATCATCGGGAAACCCATCAAGCAGTTCCCAGCGATCCAGACTAACTTTGTTTATAAGCCAAATTGTAATGTTCCTAACGCTCCTTACTCCTGTGATATTTGTGGCAAAGGCTTTATGCACAAGAAGAATATATGGAAACATAAGAAGGTACTACACGCGGATATACTTAACGATAGAAATGACAGCGAAGAAAATACTATGCAAGCTTCTACCGAGGAAGACGACTACAATGTAGATGAAAATGGTGCCATTTTGTCGACACCACAGTTCAACAGCTTTAACTTTGCGAACTTTACTAACAATGTTCAGCAGCAGCAACCACAAGAGGATCCAATGCCTTTCTCGTGCGAACTCTGTTTCAAGCGATTTCCGCTTAGATCTAGTTTGTGGAAACACAAACGTGCTAAGCACGGAATCATCAATGCCAGCGCTGGCGGCGACGCTATAACCCCCACCTCAGTGGGCGAGGGCAGTAGCAGGTCGAGTTGCACAATTTGTAAAATAACTTTCTCTGATAAGAAGTCGTACTACCGTCATAGGAAGAATGTGCACAAATCGGCGACACAGATGTGTAAAATATGCGGGAAACCACTGAATTCAACGTTAGAACTTTATGAGCATTTGAAAGCTGCACACGCGCGTGAGCTGTTGGGCTACAACGCCAGTCAGGGGACAAGTAGTAAGTCTCAGGAAATGAAACAGGAACTGGAGGTGGAATATGAAAACGATCAAGATTCGACCGATCCTTCAGTAGACTACCAAGCGCGCTATCCTTGCGACACATGCGGCAAGCAATTCGTCGGATTACTGGCTTTACAGAACCATCAGTGTATAAATCAGGTGCAGTCACAGCCGCAGACGTTCGACTGCGAAATATGCCACAAGAGCTACACCTCTATCGCTGCGCTGAAGAGCCACCGCGGCTGGCACTTGCGGTCCCCCGATGGCAAAGCGGCTGCTAACAACTCGGGGCTGTGGATGCCGCAGAACAAAGTGACGAACAAGGTCAGTAAGCACGAGGTGGTGGACCCGGTACAATTGGCACGTGTGTCGCATTCGCCCGCTTCGTCCACTCCCGCCGCCACCGTGGCCGCCAAGCGCAGGCTGCCACCTGAAGTTGAGGTCACCGTCGTCAACCCCAACAAGAAACTGCGCTCTGATGACTCCATAGACCTAGACCAGCAGACCGGGGCCCTAGAGGACAGATACTGTACGATTTGCGACAAAGAATTCACTAAACGAGCGGCGTACCAGCGCCACATGGATGAGGTCCACCAGCCCAATTCGGTCTTCTGTCCAGTATGTGACAAGAGCTTCACTAGGAAATCTACTTTGATCGTGCACATGAAGAAGCACTATGAAGGCGGACAGGGCAGTTCTAGCGGCACGCAGGTGGAGGACGAGGCGGCGTGTGACGTGTGCGGCACTCACTTCGAGAGCGAGAGCGCGCTACGGGCTCACAAGGTGCGTCACCACGGGGAGGAGGAGTCTGAGGAGTCGGAGGAGGAGGGCAGCGTCCCGGCGGCGCAGCCCGGGGAGTTCACATGCGCGCAGTGCGGAGACGGCGTGGCTACGCCGCGCGATCTCATCGCCCATCGCACTATGCACGCCACCCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTTGCGAGGGCTCTGGACCTCTCTTCGCATACTCGGGCGAGACACGCCGACAACGAGAAAGTATTCTTCCCCTGTGCCATGTGCGACCGGTTCTACATGAACAAGAAGAGTTTGCAGCGGCACATCGAGACGGCTCATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLATKIKDCVSVQISENDDLPTKVCRKCMDNVNNWHIFKSVCERTQNKLESLIKKDGNQLEEVKIKSEPLFDEAYDDGVVIDGSYPDGENASSSAKIQPEGPPILASLGLTPRSDKGMDSEKEEEEEEDEEMNESGRSFSSVPAMPEVSITVMRPSGETLAAKQGIQALASKDCLVCSRSYRYSHNARRHELTAHNFDRYTNKVSAKKSFAQMQPKLRPNPFNPKARLMPSHKMHLIPKPVPKLMPHKIINPPQPVLIKKGPQNNLPYPLRIKALKDLQIKKKEPQMLKTLLTSKPEILTSEIDIANSEPESPETLISEPEIASFQVEAILSEPDAFDQPQGEEDVEGEREETNQSQQYDTVDMDSENEIEIARQQENEIEDDDHNVDNDNEDNMQHDDENNIDGAQSETEKELLEENGELDENAEKEENVENKIEEPEESKEVEGEDDGEHEEQEVNHDDNEEEEDEDMPPMSLAPVVEINEDMQTNSYNSEVNEEEEELDETADLNETEEEPVKELDPDKIYVTKTQRDFIVKYRDIIQQINTKVCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNESGITDEMVLDDEPKEAKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPMICVHCGSRFKDKSLIKKHIRNGDCTVYISCDLCSEKFSNMQTFNDHALAVHAGNFEPSDNQNQCVDGRLTDCPICGKKNSNYPNLVKHLKIIHNEEKPHYCKHCDAKFEQIADLNQHIYMGHSDRGMSLSSEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCNVCTNSYSTPQKLSEHVQQAHPGAGAALPTLENEFFCDICVRSFKSRQAYSNHMRIHARVPTHNRKPGDPKGFSPQIIGKPIKQFPAIQTNFVYKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNDRNDSEENTMQASTEEDDYNVDENGAILSTPQFNSFNFANFTNNVQQQQPQEDPMPFSCELCFKRFPLRSSLWKHKRAKHGIINASAGGDAITPTSVGEGSSRSSCTICKITFSDKKSYYRHRKNVHKSATQMCKICGKPLNSTLELYEHLKAAHARELLGYNASQGTSSKSQEMKQELEVEYENDQDSTDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVQSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTNKVSKHEVVDPVQLARVSHSPASSTPAATVAAKRRLPPEVEVTVVNPNKKLRSDDSIDLDQQTGALEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGQGSSSGTQVEDEAACDVCGTHFESESALRAHKVRHHGEEESEESEEEGSVPAAQPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIETAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00833313;
- 90% Identity
- -
- 80% Identity
- -