Rfor007664.2
Basic Information
- Insect
- Rhodophaea formosa
- Gene Symbol
- -
- Assembly
- GCA_963082605.1
- Location
- OY720209.1:7350955-7360253[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0046 0.38 12.2 1.0 3 23 208 229 207 229 0.96 2 23 0.33 27 6.4 0.3 1 22 607 628 607 628 0.95 3 23 6.4 5.2e+02 2.3 0.3 1 22 670 691 670 693 0.82 4 23 0.0032 0.26 12.7 0.7 3 21 704 722 702 723 0.94 5 23 0.25 20 6.8 0.2 2 23 731 753 730 753 0.89 6 23 0.0043 0.35 12.3 0.1 3 23 774 795 772 795 0.96 7 23 0.0027 0.22 12.9 1.7 1 23 801 824 801 824 0.95 8 23 0.12 9.8 7.7 0.0 1 23 849 872 849 872 0.90 9 23 0.0053 0.43 12.0 3.5 1 23 877 899 877 899 0.97 10 23 0.011 0.86 11.1 0.2 1 23 905 928 905 928 0.95 11 23 0.00016 0.013 16.8 1.3 1 23 942 964 942 964 0.97 12 23 0.00017 0.014 16.7 1.8 1 23 1012 1035 1012 1035 0.97 13 23 0.0016 0.13 13.7 1.7 1 23 1096 1119 1096 1119 0.96 14 23 0.0011 0.086 14.2 2.1 2 23 1144 1166 1143 1166 0.95 15 23 0.083 6.8 8.2 0.1 2 23 1172 1194 1171 1194 0.93 16 23 0.0095 0.77 11.2 0.2 1 21 1239 1259 1239 1260 0.95 17 23 0.00099 0.081 14.3 0.2 1 23 1270 1292 1270 1292 0.93 18 23 0.00011 0.0087 17.3 0.3 2 23 1384 1406 1384 1406 0.93 19 23 1.7e-07 1.4e-05 26.1 1.1 3 23 1413 1433 1412 1433 0.98 20 23 0.0025 0.2 13.0 1.3 3 23 1452 1472 1451 1473 0.94 21 23 0.18 14 7.2 0.0 1 23 1495 1517 1495 1517 0.97 22 23 0.026 2.1 9.8 0.6 1 23 1523 1546 1523 1546 0.95 23 23 0.00014 0.011 17.0 0.5 1 23 1554 1577 1554 1577 0.97
Sequence Information
- Coding Sequence
- ATGAGTGTGAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCGACGAAAATCAAGGATTGCGTCTCTGTTCAGataagcGAAAATGACGACCTGCCAACTAAAGTCTGCAGAAAATGCATGGACAATGTAAACAACTGGCACATATTTAAGTCAGTATGTGAAAGGACACAAAACAAACTAGAATCTCTGATAAAAAAAGATGGCAACCAACTAGAAGAGGTGAAAATCAAAAGTGAGCCACTTTTTGATGAGGCTTATGATGATGGAGTGGTTATTGATGGGTCATATCCTGATGGTGAGAATGCGGGAAGTACAGCCAAAATACAGCCAGAAGGCCCACCAATCTTGGCTTCGCTGGGGCTCACACCAAGGAGTGATAAGGGTATGGACAGTGAAAAGGAGGAAGAGGAGGAAGAAGACGAAGAGATGAACGAATCGGGCCAGTCGTTCTCCAACGTGTCGGCCATGCCTGAGGTGTCCATCACGGTGATGCGGCCCAGCGGCGAGACGCTGGCTGCCAAGCAGGGCATCCAAGCACTGGCCTCCAAGGACTGCCTGGTGTGCGGCCGCTCTTACCGCTACAGCCACAACGCGCGCCGCCACGAGCTCACCGCGCACAACTTCGACCGCTACACCAACAAGGTCTCCAAGAAGTCCTTCGCGCATATGCAACCAAAACTCCGACCCAACCCCTTTAATCCCAAGGCGCGCCTCATGCCGAGCCACAAGATGCATCTCATACCCAAACCGGTTCCCAAATTGATGCCGCACAAAATAATCAACCCGCCGCAACCGGTTCTCATCAAAAAAGGACCACAAAACAATTTACCTTATCCGCTTCGTATCAAGGCGTTGAAGGacttacaaataaagaaaaaggaACCGCAGATGCTCAAAACTTTGCTCACGTCTAAACCGGAGATTTTGACCTCCGAGATCGACATCGCAAATTCCGAACCTGAAAGCCCTGAAACTTTGATTTCTGAACCTGAGATTGCTTCTTTCCAAGTTGAGACTATACTGTCCGAACCTGACGCTTTTGATCAGCCGCAACCCGAGGAAGACGCTGAAGGCGAAAGGGAAGAAAATAATCAAAGTCAGCAGTATGACACTGTTGATATGGATTctgaaaatgaaattgaaatcgCTCGTCAGCAAGAAAATGAAGTTGAGGAGGATGACCATAATGCAGACAATGACATTGAAGATACCATGCAGCACGATGACGAAAATAATATGGAGGGGGCTCAAAGTGAGACAGAAAAAGAGCTTCTTGAGGAAAATGGCGAACATGACGAGAATGCAGAGAAAGAAGATGATGGTGAAGATAAAGTTGAAGAACAGGAAGAGAGTAAAGAAGTCGAGGGAGAGGACGATGGAGAACATGAGGAACAAGAAGTAAATCATGACGATCATGAGGAGGATGAAGAGGACATGCCTGCCATGAGTTTGGCACCTGTCGTGGAAATCAATGAGGACATGCAAACCAATTCATACAACAGTGAGGTGAATGAGGAGGAAGAAGAACTGGACGAGACTGCTGACCTCAACGAAACAGAAGAAGAACCAGCCAAAGAGCTGGACCCAGACAAAACTTATGTAACCAAAACGCAAAGAGATTTCATTGTTAAATACAAGGACATCattcaacaaataaatacaaaggtGTGCCTTTGCTGTGACCGCGAGCATCCGCGGCGAAAAGCAGTCATACAGCATTTGCAGAAAAATGGACATAAAGTCCCGAAACATACCTGTTACAATTGCGTCGTTACCTTTGGACATATTGGCGCACTGCTAAGTCATATGAGATCTAACACTTGCACAGACTTGTGGAAGATTATTTACAACGAGAATGGTATAACGGATGAAATGGTTCTAGACGACGAACCTAAGGAAGCTAAAGTTCagtataaagatattttcaatgCAAGGTCGTATGCTTGCAAATTGTGCCCGGCGAAGTTCCAACTCAAGCAGTTTATTATGAAACATGTGCTGGATGTACATGAGGACGGCCAGTCGAGAGTCCCCATGATTTGCGTTCATTGCGGCTCACGATTCAAAGATAAGAGCTTAATCAAGAAACATATACGCAATGGAGACTGCACAGTGTACATATCTTGCGACTTATGTTCGGAGAAGTTTTCCAACATGCAAACATTCAATGACCACGCGTTGGCCGTACACGCGGGAAATTTCGACCAGACTGATAGTCAGAGTAAGTGCGTGGATGGCCGCCTCACGGATTGTCCCATATGCGGAAAGAAGAATAGCAATTATCCCAATTTGGTCAAACATCTAAAGATAATACACAATGAAGAAAAGCCACATTATTGCAAACACTGCGATGCTAAATTCGAGCAAATCGCCGATCTTAACCAACATATCTATATGGGGCATTCTGATAGAGGAATGAGTCTCAGCAGCGAGCCTGACATGTCGCTCGTGAAGGAGGAAGCTGAGGAGTACCACTACTCGTGCACGGAATGTAACGCCATTTTCGAGACTGTGGACGCTTGGACCGACCACCAGGTGGCCGAGCACAACCAAGTCGCGCACCACTGTGATCAGTGTGACAAGAAGTTCCTGCGACCCTCGGAACTCGCTGAACATAAAAATACTCACTTGCGGGTAAAGTTCTACCCGTGCAACGTTTGCACGAACTCGTACAGCACGCCACAGAAGCTGTCGGAGCACGTGCAACAAGCGCACCCCGGTGCCGGATCAGCATTACCCACTTTGGAGAACGAGTTCTTCTGCGACATTTGTGTTAGGTCCTTCAAAAGTCGCCAAGCGTACTCCAACCACATGCGTATACACGCGAGAGTCCCCACCCACAACAGGAAACCCGGTGATCCCAAAGGTTTCTCGCCGCAAATCATCGGGAAACCCATCAAGCAATTCCCTGCAATCCAAACTAATTTTGTTTACAAGCCAAATTGTAATGTTCCTAATGCTCCTTACTCCTGTGATATTTGTGGCAAAGGCTTTATGCACAAGAAGAATATATGGAAACATAAGAAGGTACTACACGCGGATATACTCAACGATAGAAATGACAGCGAAGAAAATACTATGCAAGCTTCTACCGAGGAAGACGAATACAATGTAGACGAAAATGGTGCCCTTTTGTCGACACCACAGTTCAACAGCTTTAACTTCGCGAATTTCACTAACAATGTTCAGCAGCAACCACAAGAGGATCCAATGCCTTTCTCGTGCGAACTTTGTTTCAAGCGATTCCCGCTTAGATCTAGTTTGTGGAAACACAAACGTGCTAAACACGGAATCATCAATGCCAGTGCTGGCAGCGACGCTCTCACCCCCACCTCAGTGGGGGAGGGCAGTAGCAGGTCGAGttgcacaatttgtaaaataacttTCTCTGATAAGAAGTCGTACTACCGTCATAGGAAGAACGTGCACAAATCGGCGACACAAATGTGTAAAATATGTGGCAAACCACTGAATTCGACATTAGAACTTTATGAGCATCTGAAAGCAGCACACGCGCGCGAGCTGTTGGGCTACAACGCCAGTCAGGGGACTAGCAGCAAGTCTCAGGATATGAAACAGGAAATTGAGGTAGACTATGAAAACGATCAAGATTCGATCGACCCTTCGGTGGATTACCAAGCGCGCTATCCTTGCGACACGTGCGGCAAGCAATTTGTAGGGTTACTGGCGTTGCAAAACCATCAGTGTATAAATCAGGTGCAGTCACAGCCGCAGACCTTCGACTGTGAGATCTGTAACAAGAGCTACACGTCTATCGCCGCGTTGAAGAGCCACCGCGGGTGGCACTTGCGCTCGCCCGATGGCAAAGCGGCTGCGAACAACTCGGGCCTCTGGATGCCGCAGAACAAAGTGACGAGCAAGGTCAGCAAGCACGAAGTGGTGGATCCTGTGCAATTAGCGCGAGTGTCGCACTCCGCGCCCGTCTCCACGCCCGCCGCCACCGTGGCCGCCAAGCGCAGGCTGCCGCCAGAAGTAGAGGTCACCGTCGTCAACCCCAACAAGAAAATGCGCTCCGACGACTCCATAGACCTAGAACAGACCGGTGCCCTTGAAGACAGATACTGCACGATTTGCGACAAAGAGTTCACTAAGCGAGCGGCTTACCAGCGCCACATGGACGAGGTCCACCAGCCTAACTCGGTGTTCTGTCCCGTATGCGACAAGAGCTTTACTAGAAAATCGACCTTGATCGTGCACATGAAGAAGCACTACGAGGGCGGGCAGGGCAGTTCTAGCGGCACGCAGGTGGAGGACGAGGTGGCGTGCGATGTTTGCGGCACACACTTCGAGAGCGAGAGCGCTCTGAGGGCGCACAAGGTGCGTCACCACGGCGAGGAGGAGTCTGAGGAGTCGGAGGACGAGGGCAGCGTGCCGGCGGCACAGCCCGGCGAGTTCACGTGCGCGCAGTGTGGCGACGGCGTGGCCACGCCGAGGGATCTCATCGCGCACCGCACCATGCACGCCACAGCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTCGCGAGGGCCCTGGACCTCTCGTCGCACACCCGGGCGAGACACGCCGACAACGAGAAAGTATTCTTCCCCTGTGCCATGTGCGACCGGTTCTACATGAACAAGAAGAGCTTGCAGCGGCACATCGAGACGGCTCATTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLATKIKDCVSVQISENDDLPTKVCRKCMDNVNNWHIFKSVCERTQNKLESLIKKDGNQLEEVKIKSEPLFDEAYDDGVVIDGSYPDGENAGSTAKIQPEGPPILASLGLTPRSDKGMDSEKEEEEEEDEEMNESGQSFSNVSAMPEVSITVMRPSGETLAAKQGIQALASKDCLVCGRSYRYSHNARRHELTAHNFDRYTNKVSKKSFAHMQPKLRPNPFNPKARLMPSHKMHLIPKPVPKLMPHKIINPPQPVLIKKGPQNNLPYPLRIKALKDLQIKKKEPQMLKTLLTSKPEILTSEIDIANSEPESPETLISEPEIASFQVETILSEPDAFDQPQPEEDAEGEREENNQSQQYDTVDMDSENEIEIARQQENEVEEDDHNADNDIEDTMQHDDENNMEGAQSETEKELLEENGEHDENAEKEDDGEDKVEEQEESKEVEGEDDGEHEEQEVNHDDHEEDEEDMPAMSLAPVVEINEDMQTNSYNSEVNEEEEELDETADLNETEEEPAKELDPDKTYVTKTQRDFIVKYKDIIQQINTKVCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNTCTDLWKIIYNENGITDEMVLDDEPKEAKVQYKDIFNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPMICVHCGSRFKDKSLIKKHIRNGDCTVYISCDLCSEKFSNMQTFNDHALAVHAGNFDQTDSQSKCVDGRLTDCPICGKKNSNYPNLVKHLKIIHNEEKPHYCKHCDAKFEQIADLNQHIYMGHSDRGMSLSSEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCNVCTNSYSTPQKLSEHVQQAHPGAGSALPTLENEFFCDICVRSFKSRQAYSNHMRIHARVPTHNRKPGDPKGFSPQIIGKPIKQFPAIQTNFVYKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADILNDRNDSEENTMQASTEEDEYNVDENGALLSTPQFNSFNFANFTNNVQQQPQEDPMPFSCELCFKRFPLRSSLWKHKRAKHGIINASAGSDALTPTSVGEGSSRSSCTICKITFSDKKSYYRHRKNVHKSATQMCKICGKPLNSTLELYEHLKAAHARELLGYNASQGTSSKSQDMKQEIEVDYENDQDSIDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVQSQPQTFDCEICNKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKHEVVDPVQLARVSHSAPVSTPAATVAAKRRLPPEVEVTVVNPNKKMRSDDSIDLEQTGALEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYEGGQGSSSGTQVEDEVACDVCGTHFESESALRAHKVRHHGEEESEESEDEGSVPAAQPGEFTCAQCGDGVATPRDLIAHRTMHATATKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIETAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00833313;
- 90% Identity
- -
- 80% Identity
- -