Hham013070.1
Basic Information
- Insect
- Hypothenemus hampei
- Gene Symbol
- lrrfip2
- Assembly
- GCA_013372445.1
- Location
- JABRWK010000005.1:828943-834565[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-104 1.4e-99 333.2 27.7 1 300 29 317 29 317 0.95 2 2 0.024 4.1e+02 -0.0 3.8 193 232 347 385 318 392 0.49
Sequence Information
- Coding Sequence
- ATGGACGGTGTGGGCGGAGGGAGACGGCGTGTTGCTGCCAAATCCTCTGCAGAAGACCAAGCTCTCGACCAGATAGCCAAAGAAgctgAAGCACGATTATGGGCGAAACGACAAGCTCGCGCGGAAGCTCGGGAAATTCGGATGAGAGAATTGGAACGAATTCAACGTGAACAAGAAGAAAACGCCGACCGGCAATTTGATATGATGGTAGCCTCGACTGAACCCGCATGGTTACCGAGGGCTCGAGGCGTCTCCACAACGAGACATCGTCCGGCTAGCAGAAGAAATTCGGAGGACTCTTTAGAGGATAATGGAGGAGGTGGTAGCTTGAGAGATCTTCGAGCGGAACTTAAAGAGGTAGAGGAACGGTTTCGGAACGCAATGATCGCCAATGCTCAGCTAGATAATGATAAGGCCGCTCACACTTATCAATTGGAACTCCTTAAAGACAgATTAGAAgaattagaagaagaaaattccCAATTGAAACGCGAACATAGAGATAAATGTAGGGAACATGAGCAATTGAAACGAGTCACTCAACAGTTAAAGGATGAACTTCAAGCGTATAAACGGGAATTAGAAGAAAGGGATAGgctaattgaagaaaaagggTTGGTTATAGTATGCGGCGAATCGGATGGTGAGGGTCAGCCTCCGAAAAAGATATTGGTGCATGCTGAAAATGCTAGGCTTTTAGAGGAAGGAGATGGTAGTTTAGATGTACGATTAGCCAAATTTGTCAAGGAACGTGTAGAGCTTCAGGATCAAATTAGTAGTTTAAAATTAGAGTTAGAGGAGGAAAGGAGTAGGCGAAGAAAATCAACAACGAATAGTTTATTGAATGGGCCATTATCTGAATATGATCCTGAGGACTTTCAACGTGAAGCGAGCAAACAATTGGCAGACTACAAATTCCGTGCCCAAAAAGCCGAACAGGATGTGGCCACTTTACAAGCAACTGTTGCTCGTCTTGAAAGTCAAGTAATACGTTACAAAACGGCTGCCGAAGTTTCAGAACAATCTGAAGAAGCCCTGAAAGCTGAAAAGCGAAAATTGCAAAGAGAAgcTAGAGAAGCTCAGAACAGAGCAGACGAGCTCGAGACTTCAAACACACACCTTTTGAAGCGATTAGACAAACTAAAGAATGCTAAATCCGCCCTCTTAAAAGAACTCTGA
- Protein Sequence
- MDGVGGGRRRVAAKSSAEDQALDQIAKEAEARLWAKRQARAEAREIRMRELERIQREQEENADRQFDMMVASTEPAWLPRARGVSTTRHRPASRRNSEDSLEDNGGGGSLRDLRAELKEVEERFRNAMIANAQLDNDKAAHTYQLELLKDRLEELEEENSQLKREHRDKCREHEQLKRVTQQLKDELQAYKRELEERDRLIEEKGLVIVCGESDGEGQPPKKILVHAENARLLEEGDGSLDVRLAKFVKERVELQDQISSLKLELEEERSRRRKSTTNSLLNGPLSEYDPEDFQREASKQLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREAREAQNRADELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01215957; iTF_00431456;
- 90% Identity
- -
- 80% Identity
- -