Pcyl007171.1
Basic Information
- Insect
- Platypus cylindrus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949748235.1
- Location
- OX456489.1:6825599-6830811[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-104 3.4e-100 335.1 25.0 1 300 83 374 83 374 0.91 2 2 0.094 5.4e+02 -0.4 5.6 120 171 372 423 372 448 0.74
Sequence Information
- Coding Sequence
- ATGATCATTTTGGGTGTATCTATTTGTGGTACTCGTACGTGTAATATTTTATCCACAATTTCTGAAGTTAAACTAAATGCGGAGAAAATTGTATCGGAAAATTCTGAGGAAAAAGTAAATCGATCGTTTTGGGGTAACGTGATTAAAAGAAGCCCGTCTCTAACAGATTGTTTGGatgaaaatgatgataaagaaaaaagatcTGATATACTGCTAGTTGCAGAGGTTTCTATTATGAGGAAAGATGCAGAGCAACGTTTATGGGCAAAAAGACAAGCGCGCGCAGAAGCGCGCGAAATACGTATGCGCGAATTAGAACGGATGCAACGCGAACAAGAGGAGAATGCCGATCGGCAATTCGATATGCTTGCAGCAGCTTCAACCGATCCAATAATGGTTGGTGTGAGGAGTGGACGTCCATCAAGTGGACGGCATCGACCAGCAAGTCGAAGGAGTTCCGAAGATTCTTTAGAAGATTGCGGCGGCGGAAGTTTGAGAGAATTAAGGCACGATttgaaagaattagaagagAAATTTCGCAAAGCAATGATAGCTAACGCTCAATTAGATAATGATAAAACAGCGCATACTTACCAACTGGAATTACTTAAAGATAGAATAGAAGAATTAGAAGAAGAACATTCTCAATTAAAACGAGAGCATAGAGACAAGTGTAGAGAACATGAACAATTAAAAAGGCTTTGTGCACAATTAAAAGATGATTTATGTGCAGTGAAATATGAATTAGAAGAAAGAGATCGCTTAATAACTGAAAAGGGTTTAGTTGTGGTAACGGGTGACCCTGAAGAAGATGGTGAACTACCTAAAAAGGCTTTAGTCCAAGCGGAGAATGCTAGATTATTAGAAGAGGCTGGTGATGGAAGTTTAGatgTTCGGTTAGCAAAATTTGCAAAAGATAGAACCGAATATCAAGATCAAATTAGTAgtttaaaattagaattagaagaagaaagaagcagaagaagaaAATCTGGATCGAgtagtttattattaaatggtCCTACTTCTGATTATGATGTTGATGATTTACAAAGAGAGGCTAGTAAACATTTAGCTGATTATAAATTTCGTGCTCAAAAAGCTGAACAGGATGTGGCAACATTACAGGCAACGGTTGCTAGATTAGAAAGTCAAGTAATCCGATATAAAACGGCAGCGGAAATATCTGAACAATCAGAAGAAGCATTAAAATCGGAAAAGAGAAAATTGCAACGAGAGgcAAGGGAAGCTCAAAGTCGAGCGGAAGAATTAGAAACATCAAATACGCACTTGCTAAAACGGttagataaattaaagaaTGCAAAATCGGCATTGTTAAAGGAACTTTGA
- Protein Sequence
- MIILGVSICGTRTCNILSTISEVKLNAEKIVSENSEEKVNRSFWGNVIKRSPSLTDCLDENDDKEKRSDILLVAEVSIMRKDAEQRLWAKRQARAEAREIRMRELERMQREQEENADRQFDMLAAASTDPIMVGVRSGRPSSGRHRPASRRSSEDSLEDCGGGSLRELRHDLKELEEKFRKAMIANAQLDNDKTAHTYQLELLKDRIEELEEEHSQLKREHRDKCREHEQLKRLCAQLKDDLCAVKYELEERDRLITEKGLVVVTGDPEEDGELPKKALVQAENARLLEEAGDGSLDVRLAKFAKDRTEYQDQISSLKLELEEERSRRRKSGSSSLLLNGPTSDYDVDDLQREASKHLADYKFRAQKAEQDVATLQATVARLESQVIRYKTAAEISEQSEEALKSEKRKLQREAREAQSRAEELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00830295;
- 90% Identity
- -
- 80% Identity
- -