Dpon002034.1
Basic Information
- Insect
- Dendroctonus ponderosae
- Gene Symbol
- lrrfip2
- Assembly
- GCA_000355655.1
- Location
- NW:404068-414106[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.5e-103 2.6e-99 331.5 21.7 1 300 89 375 89 375 0.91 2 2 0.029 3e+02 -0.3 3.8 193 232 405 443 376 450 0.49
Sequence Information
- Coding Sequence
- atgataattatGGGTGTTAGTTTTTGTGGCACGCGGATGCCTAACGCGTTATCGCCGACTATTGACAATACTGGTGGAGTGCTTGGGAAAATGCCCCCGAAACTACCGTTGGATGGGGGCCCGAAAGCTACGGAACTTTTCACGCGAAGCTTCAATGCGTTGAGAAAAATGCCGTCGTTGACCGACTGTTTGGACGAAAAGTGCGCCTTGGAGGCAAAGGACGGAGTCTTATTAGTCACGGCGGTATCAGCAGCAAAAAAGGATgcTGAAGCGAGACTATGGGCCAAGAGGCAAGCACGTGCGGAAGCTCGAGAAATTCGCATGCGGGAACTAGAACGCATGCAACGTGAACAGGAAGAAAACGCCGATAGACAATTTGATATGTTGGTGGCATCAACGGAGCCCGTTTGGGGCCCACGGGGGCGCGCCCCCCCTACCACGAGGCACCGACCGGCCAGCAGAAGAAATTCTGAAGACTCCTTGGAGGATGCAGGCGGCGGCGGAAGCCTAAGGGACATACGGGCAGAGCTCAAAGATGTCGAGGAGCGGTTTAGAAAGGCGATGATTGCGAACGCCCAATTGGATAACGACAAGGCGTCGCAAACCTACCAATTAGAGCTGCTTAAAGACCGGTTGGAAGAGCTGGAGGAAGATAATTTGCAGTTGAAGCGCGAGCATAGGGATAAATGCAGGGAGCACGATCAGCTGAAGAGGCTTTGCCAGCAGCTGAAGGACGAGCTGCGCCTGTTTAAAAACGAATTGGAAGAGCGGGATAGGTTAATAGAAGAGAAAGGACTAGTGATAGTCTTTGCGGAGCCGGAGGAAGAGGGACAGCCTCCGAAGAAAGCGCTGATTCAGGCCGAGAACGCCAGACTCCTTGAAGGAGGGGACGGCAGTCTAGACGTGCGATTATCAAATTTCGCGAAAGAAAGGAGCGAGCTTCAGGATCAAATAAGTAGTTTAAAGTTAGAATTAGACGAGGAGAGGACTCGAAGACGGAAGTCCAGCGGACTGCCAAATGGCCCTCTGTCGGATTGCGACTCGGATGATCTGCAACGGGAAGCAAGTAAGCAATTGGCTGATTACAAGTTTCGGGCGCAAAAATCAGAGCAAGACGTTGCGACATTGCAAGCGACCGTCGCCAGATTGGAGAGCCAAGTGATTCGGTACAAAACCGCCGCGGAAGTATCGGAACAGTCTGAGGAAGCCCTGAAAGCCGAAAAGCGGAAGCTCCAAAGAGAGGCTAGAGAGGCTCAGAACCGGGCGGATGAGTTGGAAACCTCCAACACCCACCTCCTCAAACGATTAGACAAGCTTAAAAACGCGAAATCAGCGCTATTGAAAGAACTCTGA
- Protein Sequence
- MIIMGVSFCGTRMPNALSPTIDNTGGVLGKMPPKLPLDGGPKATELFTRSFNALRKMPSLTDCLDEKCALEAKDGVLLVTAVSAAKKDAEARLWAKRQARAEAREIRMRELERMQREQEENADRQFDMLVASTEPVWGPRGRAPPTTRHRPASRRNSEDSLEDAGGGGSLRDIRAELKDVEERFRKAMIANAQLDNDKASQTYQLELLKDRLEELEEDNLQLKREHRDKCREHDQLKRLCQQLKDELRLFKNELEERDRLIEEKGLVIVFAEPEEEGQPPKKALIQAENARLLEGGDGSLDVRLSNFAKERSELQDQISSLKLELDEERTRRRKSSGLPNGPLSDCDSDDLQREASKQLADYKFRAQKSEQDVATLQATVARLESQVIRYKTAAEVSEQSEEALKAEKRKLQREAREAQNRADELETSNTHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00830295;
- 90% Identity
- -
- 80% Identity
- -