Hpun041921.1
Basic Information
- Insect
- Hypomecis punctinalis
- Gene Symbol
- -
- Assembly
- GCA_949316475.1
- Location
- OX438822.1:9487319-9509591[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.26 29 6.8 2.6 1 23 236 259 236 259 0.95 2 24 0.00093 0.1 14.5 0.8 1 23 327 349 327 349 0.98 3 24 0.22 23 7.0 1.6 1 22 353 374 353 375 0.78 4 24 0.012 1.3 11.0 0.6 1 23 379 402 379 402 0.96 5 24 0.063 6.8 8.7 5.4 2 23 409 431 408 431 0.95 6 24 0.0015 0.16 13.8 0.1 1 23 438 461 438 461 0.95 7 24 0.02 2.2 10.3 1.6 3 23 469 489 467 489 0.97 8 24 4.8e-06 0.00052 21.7 2.7 1 23 495 517 495 517 0.98 9 24 0.041 4.5 9.3 1.2 1 23 557 579 557 579 0.95 10 24 6.6 7.2e+02 2.3 0.1 5 23 610 629 608 629 0.92 11 24 0.022 2.4 10.1 0.3 2 23 650 672 649 672 0.96 12 24 0.00061 0.066 15.0 2.6 2 23 678 700 677 700 0.95 13 24 0.012 1.3 10.9 0.5 1 23 705 728 705 728 0.94 14 24 0.67 73 5.5 0.4 2 23 731 753 730 753 0.92 15 24 0.022 2.4 10.1 0.5 2 22 760 780 759 780 0.93 16 24 0.0027 0.3 13.0 0.5 1 23 838 861 838 861 0.95 17 24 4.4 4.8e+02 2.9 0.1 3 23 890 911 888 911 0.90 18 24 0.23 25 7.0 0.3 3 23 935 957 934 957 0.94 19 24 0.0009 0.098 14.5 0.4 3 20 964 981 962 985 0.90 20 24 0.019 2.1 10.3 0.6 1 23 990 1013 990 1013 0.97 21 24 0.002 0.22 13.4 0.1 2 23 1019 1041 1019 1041 0.92 22 24 7.4e-05 0.0081 17.9 4.7 1 23 1045 1068 1045 1068 0.97 23 24 0.00032 0.035 15.9 0.6 2 23 1075 1096 1074 1096 0.96 24 24 0.012 1.4 10.9 3.1 1 23 1102 1124 1102 1124 0.97
Sequence Information
- Coding Sequence
- ATGAATTTCGACGAGATAATAGTGAAGGAGAGTCCGGGAATATGCCGGTGCTGCTTATCCGAGGGCTGTTACAAAGACTTAGGCACCGAATATACATGGATGAATGAAACGGAAGTTTATGCTGATATGCTGCTGGATTGTTTCGATATTGGCATAACTCAACACAACGATGGACCAAATGGAGCCAAGCGTCTCATCTGTGAAGTGTGTGTCACCCGGCTGCGAGACGCGTGCAACTTCAAGAAGCAGGTGCTGGACTCTGAGAAGCGGTTCATTGACATGCTCGGTCGAGGAGAATTTAGGCCTAAAGTGCTGATGTACCCGCCCCAGCGCCAGATGAAGGAAGAATCAGCGGAAGAGGCACCAGAAGATGTTATGTCCGAGGATGTGGAGTACCTCGAGGATATGGGCTTTGAAGGGGAAGAGGAAGAAGTAAAGACCGAAGCAGTGGTTCAGTCCACATCAACAGCAAGTACGTCAGTGGCGCCGCGGCCCAAGCGCGGCCGGCCGCGGAAGGAGGACCAGACACCCGACAAGGCGAAGCGGCAGAAGGTGGCCAAAGGTAACATGCCAGAGAAAGCATCAAAAGAGGCAAGGAGTAAGTCCTCTCTATCGGCCACGAAGAGAAATCGTCTCATGAAGAAGAACGCCGTTATTCTACTAGAGTCCTCCACTATCCTCCCCTTTAAATGGCACAGACAAAACTACCTCTGTTTCTATTGCCATCTCACTCTGAAATCCATGGACGAAGTGAGACAGCACACTAAAACAGAACACGTTAAACCGAACATAAAATCAGCTGTATCTTTCTTGAGACGAGATGAGAAAGCCAAAGTTGATGTATCGACGATTCAGTGTAGACTTTGCGCGCAAACGATTTTGGACTTAAACAGTTTGATTGAACACTTGAAGACAGTTCATAATAGGGTTTTCAGCGAAGGCGAAAATGGTTTGATACCATACAAACTAGATAGCACCTACCAATGCGCGATTTGCAACGAAACCTTTCAGTATTTCATCAAATTAAATCAGCACATGAACGAGCATTTCGGTCATTACGTCTGCGAGCTTTGCGGGAAATCATTCCTTAGTAGCGATAGGTTACGATGTCATTCCTTGAGCCACGGATCGAAATTCCCTTGCAGCATTTGCTCTGAAGCTTTTGACTCGCTAACTCAACGTAACCACCACATTTCCTCAATCCACAACAAGCCCAAAGTCCTCAAATGCCACTACTGCCCTGAAGTCTTCACCAATTACAACAAGAGAAAGTTACACCACAATAAATTGCACAACGTAGAAATACCAGAGTACAAATGCCCCGTTTGCGATAAAGCGTTTCAGATTTTGAGCAAAATGACGGTACATGTGAAAGAAGTGCACGTGAGAGAGAAGAATTTTGGATGTACTATGTGTGACAGTAGGTTTTTTTCGAAGACCCAAGTGCAAAAGCATATGGTGAGGCATGTAGGTGAAAAAACGCATCAATGTGAAGTGTGTAAGAAAGCGTATGCGAGGAAACAGACTTTGAGAGACCATATGCGCACGCATAAAGGTGTTAAAACGCGGAAATACAAGGGATCCGAGTCGTTATCCACGCGTAGAAGGAGAAACCTTCAGATACTGTTCAACAACACGTCGATAATACCTTTTAAGTGGCGCGGAAAGTATCTCTGTTTTTATTGTAGCAAAGACGTTTCAGAATACGCGGAGTTGAAAAAACATACGAAAAACCACGGTGACTGTTCAATTCTAGATCATTCTTTGAAAGCTCTAAAGGGGGGCACGAATATGGAGATCAAAATTGACGTTTCTAATCTTACTTGCATCTGTGGTGATAAATTTCCTACTCTAGACGAGataattaaacatttacaaGCTAAACATAATTTAGATTACGATAAAGACGTAGACATGGCCATAGAGGAATATAGACTAATAGATCTAAGCTGCCTCGTTTGTGAGGAAAAGTTTTCGTATTTTGGGTATTTAGTGTCTCACGTGAATACAAAACACCCCAAGAACTGCCTTATATGTGATAAATGTAACCAAAAGTTTAATAAGAAGCGGGATTTGTTCTCGCATATGAAGAACTATCATAGAGAAGGAGGGTACCAGTGTGAACTTTGTCCCCAGGTTTTCAACTCGTTGAATATACTTAGAAAGCATAGAATCAATAGGCATATGACACGATGTCATATATGTCAATTGAGACTGCCTTCAGCAGCGTTGAGGCAGAAGCATATAGATTTAGAACATCCTGACGACGGGTCTCTCCAATGCGACGCTTGCGATAAAGAATTCCACACAAAACAAGGGCTTAGAATGCATGCGAGAAAATGCAAAGGCGATCTTCTTCAACTGTCAATTAAAAAAGAAGATTACACCATGGACTTGGACTTGAATTACGAAGACCCCGCAAAAAGACCGAGCGTTAAGCAAATACGCGAaaacatagtcatagtcattaaCATGTCCACTGCTATACCTTTCAacttttataagaataaattCAACTGCTTTTACTGTTCCAAAGACTTTCCCGATTCGGATTCTATGAAAGAACATACGATTGTTGAGCATCCCGTTTGTGATGTCAAAGAGAAATGCATAAGAAAGTGTCGAGAATCGGTAGCTTGTGTTAAAATTGACGTTTCGACGTTAGCGTGCAAGGTTTGCTTTGAAAACATGCCGAATTTGGACAACCTTCTCGATCATCTAATTGCAAAACACGACGCCAATTACGATAAGTCAATTACAACATGTTTGCAGCCTTACAGACTTATCAAAGACAATATGGCATGTCCAAACTGTCCTGGCGAAATCTTTCGCTTCTTTGGCACGCTATTAAAACACATGAATAAGAAGCATAcgaataataacattatttgcgTGTATTGCGGTGAGACGTTCCGCCGTGACCAGAATTTGCGGGTGCACATTTGGAGGCATCACCGGGATGGGCGTTTTAAATGTAACATTTGCGGTGCAGAGTGTAATATACCATCTCGATTGTACATGCACATGGCGAAATCACACGGTGTGAAAGCCGCAAAATGTCCGAAATGCCCCGAAGCGTTTGCGACCCAATATCTTCGTCAGAAGCATTTAATAGATGCTCACAACTCAGGCCATAAATGTTCCTACTGCGGCAAGCTTTTTACCAGAAACTCCTTTATGCGTGATCATATCAGAAGGACGCATTTGAAAGAGAAGAATGTAGAATGCTCCGTTTGTAACATGAAGTTCTTTAACAATGTACTGTTGAGAAGGCACATGGTTAAGCATAGTGGAGAGAAGAATTTCCACTGTGATGTGTGCGGCGAAAGATTTTTCTGGCGGAAAAGTTTGCGGACGCACATGTCTAGGCATACTAAGCATTTAGACTCGTTACATCTTTAA
- Protein Sequence
- MNFDEIIVKESPGICRCCLSEGCYKDLGTEYTWMNETEVYADMLLDCFDIGITQHNDGPNGAKRLICEVCVTRLRDACNFKKQVLDSEKRFIDMLGRGEFRPKVLMYPPQRQMKEESAEEAPEDVMSEDVEYLEDMGFEGEEEEVKTEAVVQSTSTASTSVAPRPKRGRPRKEDQTPDKAKRQKVAKGNMPEKASKEARSKSSLSATKRNRLMKKNAVILLESSTILPFKWHRQNYLCFYCHLTLKSMDEVRQHTKTEHVKPNIKSAVSFLRRDEKAKVDVSTIQCRLCAQTILDLNSLIEHLKTVHNRVFSEGENGLIPYKLDSTYQCAICNETFQYFIKLNQHMNEHFGHYVCELCGKSFLSSDRLRCHSLSHGSKFPCSICSEAFDSLTQRNHHISSIHNKPKVLKCHYCPEVFTNYNKRKLHHNKLHNVEIPEYKCPVCDKAFQILSKMTVHVKEVHVREKNFGCTMCDSRFFSKTQVQKHMVRHVGEKTHQCEVCKKAYARKQTLRDHMRTHKGVKTRKYKGSESLSTRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDVSEYAELKKHTKNHGDCSILDHSLKALKGGTNMEIKIDVSNLTCICGDKFPTLDEIIKHLQAKHNLDYDKDVDMAIEEYRLIDLSCLVCEEKFSYFGYLVSHVNTKHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYQCELCPQVFNSLNILRKHRINRHMTRCHICQLRLPSAALRQKHIDLEHPDDGSLQCDACDKEFHTKQGLRMHARKCKGDLLQLSIKKEDYTMDLDLNYEDPAKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMKEHTIVEHPVCDVKEKCIRKCRESVACVKIDVSTLACKVCFENMPNLDNLLDHLIAKHDANYDKSITTCLQPYRLIKDNMACPNCPGEIFRFFGTLLKHMNKKHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKSHGVKAAKCPKCPEAFATQYLRQKHLIDAHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSVCNMKFFNNVLLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMSRHTKHLDSLHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00033121; iTF_01208532; iTF_00634719; iTF_00650240;
- 90% Identity
- -
- 80% Identity
- -