Pdol053007.1
Basic Information
- Insect
- Plagodis dolabraria
- Gene Symbol
- -
- Assembly
- GCA_963854805.1
- Location
- OY978467.1:8548354-8571594[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.087 14 8.1 1.8 1 23 239 262 239 262 0.95 2 22 1.9 3.1e+02 3.9 0.0 3 23 289 310 287 310 0.94 3 22 0.0021 0.34 13.2 0.9 1 23 331 353 331 353 0.98 4 22 0.044 7.3 9.0 1.6 1 23 357 379 357 379 0.93 5 22 0.3 49 6.4 2.2 1 19 383 401 383 406 0.88 6 22 0.00048 0.08 15.2 0.2 1 23 442 465 442 465 0.96 7 22 0.0024 0.4 13.0 4.1 1 23 471 493 471 493 0.97 8 22 0.054 9 8.7 1.6 1 23 539 561 539 561 0.95 9 22 0.0039 0.64 12.3 0.3 2 23 632 654 631 654 0.95 10 22 0.00027 0.044 16.0 2.1 2 23 660 682 659 682 0.95 11 22 0.032 5.2 9.4 0.7 1 23 687 710 687 710 0.93 12 22 0.13 22 7.5 0.7 2 23 713 735 712 735 0.94 13 22 0.019 3.1 10.1 0.5 2 22 742 762 741 762 0.93 14 22 0.064 11 8.5 0.3 1 23 819 842 819 842 0.90 15 22 0.0098 1.6 11.0 0.1 2 23 870 892 869 892 0.95 16 22 0.068 11 8.4 0.2 3 23 916 938 915 938 0.95 17 22 0.00069 0.11 14.7 0.4 3 20 945 962 943 966 0.90 18 22 0.017 2.9 10.3 0.7 1 23 971 994 971 994 0.97 19 22 0.00082 0.14 14.4 0.3 2 23 1000 1022 1000 1022 0.92 20 22 6.3e-05 0.01 17.9 4.7 1 23 1026 1049 1026 1049 0.97 21 22 0.00027 0.045 16.0 0.6 2 23 1056 1077 1055 1077 0.96 22 22 0.011 1.7 10.9 3.1 1 23 1083 1105 1083 1105 0.97
Sequence Information
- Coding Sequence
- ATGAATTTTGacgagattgtagtcaaagagAGCCCAGGCCTCTGCCGGTGTTGCTTATCTGAAGGGTGCTATAAAGATTTGGGCACGGAATACACATGGATGAATGATACAGAGATTTATGCTGATATGTTGCTGGATTGCTTTGATATTGGCATAACGCAACACAATGATGGGCCAAATGGTCCAAAGCGGCTCATCTGTGAAGTGTGCATCACAAGGCTGCGAGATGCATGCAACTTCAAGAAGCAGGTGTTGGACTCAGAGAAGCGGTTTATTGACATGCTTGGCCGTGGAGAGTTCAGGCCTAAAGTGCTGATCTACCAGCCCAAGAGTCAGGATTTGAAGGCGGAAACCTTGGAGGAGCATGCCGAAGACACAGACTTGAATGATATCGAGTACCTGGATGACATGGAATACGGCGGTGATGAAGAGATAATAAAGTCAGAAGAGGTCCAGTCGACGTCGCAGGCCACGACCTCGGAGGAGCCAAAGAAACGTGGCCGCCCGCGGAAGGACGACGACTCGACCAAAGTCTCAAAGGTGGTCAAGAAACAGAAGGTGGCTAAAGGTAAGAGACCTGAGAGAATGCCACCGAACGAGGCAGAGAGTAAGTCCTCCATATCAGCCACCAAGCGAAACAGGCTAATGAAGAAAAACGCCATAATAATTCTAGAAAACTCTACGGTTGTCCCTTTCAAATGGCACAGGCAAAACTATCTCTGTTTCTATTGCCATCTCGCTCTGAAAACTTTCGAAGCTTTGAAAGAAcatactagaaacgaacataTGAAACCTAACATCGTAGCGGCTGTTCTGTTCATGAGAAGGGACGAAAAGGTCAAAATTGACGTGTCTTCAATCGATTGTAGACTTTGTGGCGTTGGAATTAATGATCTCAATTCCTTGATTGATCATTTGAAATTGGTCCATAAGAAAGATTTCAACGAAGGCGAATATGGCTTGGTGCCGTACATATTTGAAAGAGATTTGTATCGGTGTGCGGTCTGCAATGAAACCTTCCAATATTTCATCAAATTGAATCAACATATGAACGAACACTACGGTAGTTACGTTTGTGAATTGTGTGGAAAATCTTTTCTAAGCAGTGACCGACTGAGGTGCCATTTACTAAGCCACGGCTCAAAGTTCCACTGTCCAATTTGCTCAGAATCTTTCGACTCGCTCACACAGAAGAACCACCACGATTCTTCTGTCCACAACAATCCCAAACTACTAAAATGTTACTACTGCTCAGAAACATTTCTAAACTACACTCAACGGAAGCTCCACCATAATAAAACGCACAATATTGAAATGCCAGAATACAAATGCCCAGTttgtggtaaaatatttcaaattttgaGCAAAATGCGGGTACATTTGAAAGAGGTTCATATGCGCGAGAAGAATTTCTCCTGTTCTGTGTGTGATCATAAGTTCTTTTCGAAGACTCAGGTGCAGAAGCATATGGTTAGGCATGTGGGGGAGAGGGTGCATGTGTGTGAAAAAACGCGGAAATACAAGGGAACCGAATCTATATCGACGCGTAGAAGACGGAACCTACAGATTTTGTTCAACAACACATCGATAATACCTTTTAAATGGCGCGGGAAGTACCTCTGCTTCTATTGTAGCAAAGATGTATCGGAATATACAGATTTGCGAAAACATACTAAATTGCACGGAGATTGTTCTATCCTAGATCATTCCTTGAAAGCTTTAAAAGGGGGTACTAACATGGAAATCAAAATAGATGTATCAAATCTCTCTTGTTCTTGCGGAGACCATTTTCAATCTCTTGATGATGTGATAAAGCATTTGGAGGATAAACACAAACTCGATTACGACAAGAGTGTAGATATGCCCATAGAAGAGTACAGATTGGTTGATTTAAATTGCCTTATTTGTGATGAAAAGTTTACTTACTTCGGATATTTAGTATCACACGTGAACACGAATCATCCCAAAAACTGCCTGATATGCGATAAATGTGATCAGAAGTTTAATAAGAAGAGAGACTTGTTTTCCCATATGAAGAATTACCATCGGGAAGGAGGGTACCAATGCGAACTCTGTCCGCAGATGTTCAACTCGTTGAATATACTCCGGAAACACAAAATCAACAGACATATGACTCGATGTCATATCTGTCAATTAAGATTACCTTCGGCCTCGTTAAGGCAAAAGCATATTGAGTTAGAACACCCTGACGATGGATCTCTACAATGTGATGCTTGCGACAAAGAATTCCATACTAAACAAGGCCTCAGAATGCACGCGAGAAAATGCAAAGGAGATCTGTTTGAACTTGTAAAAAAGGAAGATTACACCATGGATTTGGATCTCAACTATGAAGACCCTGCAAAAAGACCCAGCGTCAaacaaatacgagaaaatatAGTCATTGTCATCAACATGTCGACAGCTATACCTTTCAACTTTTACAAGAACAAATTCAATTGCTTTTACTGCTCTCAAGATTTCCCCGATTCCGATGCTATGAAGGAGCACACAGTTTTAGAACACCCAGTGTGCAATATCAAAGAAAAATGTATTAGAAAGTGCAGAGAATCAGTAGCATGTGTTAAAATAGACGTATCCACTCTGACTTGTAAGGTTTGCTTCGAAAGTTTGTCAGATTTGGATAATTTACTCGACCATTTGATAGTCAAACACAACGCCAACTATGACAAAACTATCACAACATGCTTGCAACCTTACAGACTTATCAAAGACAATATGGCGTGTCCGAATTGTCCCGGCGAAGTATTTCGCTTCTTCGGAACATTGCTAAAACATATGAACAAGAAGCatacgaataataatataatctgcGTGTATTGCGGCGAGTCTTTTAGACGGGATCAAAATCTGCGCGTTCATATCTGGAGACATCACCGTGACGGACGTTTTAAATGCAATATTTGCGGTGCAGAGTGTAATATACCATCTCGTCTGTACATGCACATGGCGAAAACTCACGGGGTTAAAGCGGCCAAATGTCCTAAATGCCCCGAAACCTTTGCGACTCAGTACCTCCGTCAGAAGCATTTGATAGACGCTCACAATTCGGGCCACAAATGTTCATATTGCGGCAAACTTTTCACGAGAAACTCCTTCATGCGAGATCATATAAGACGGACGCATCTAAAGGAAAAGAATGTCGAATGCTCTGTCTGCAATATGAAGTTCTTTAACAATGTGCTGTTGAGAAGACACATGGTTAAACACAGCGGGGAGAAGAATTTTCATTGCGATGTTTGCGGTGAAAGATTCTTTTGGCGGAAGAGTTTGCGGACTCACATGTCAAGGCATAATAAGCATTTAGATGCTATACATTTGTAG
- Protein Sequence
- MNFDEIVVKESPGLCRCCLSEGCYKDLGTEYTWMNDTEIYADMLLDCFDIGITQHNDGPNGPKRLICEVCITRLRDACNFKKQVLDSEKRFIDMLGRGEFRPKVLIYQPKSQDLKAETLEEHAEDTDLNDIEYLDDMEYGGDEEIIKSEEVQSTSQATTSEEPKKRGRPRKDDDSTKVSKVVKKQKVAKGKRPERMPPNEAESKSSISATKRNRLMKKNAIIILENSTVVPFKWHRQNYLCFYCHLALKTFEALKEHTRNEHMKPNIVAAVLFMRRDEKVKIDVSSIDCRLCGVGINDLNSLIDHLKLVHKKDFNEGEYGLVPYIFERDLYRCAVCNETFQYFIKLNQHMNEHYGSYVCELCGKSFLSSDRLRCHLLSHGSKFHCPICSESFDSLTQKNHHDSSVHNNPKLLKCYYCSETFLNYTQRKLHHNKTHNIEMPEYKCPVCGKIFQILSKMRVHLKEVHMREKNFSCSVCDHKFFSKTQVQKHMVRHVGERVHVCEKTRKYKGTESISTRRRRNLQILFNNTSIIPFKWRGKYLCFYCSKDVSEYTDLRKHTKLHGDCSILDHSLKALKGGTNMEIKIDVSNLSCSCGDHFQSLDDVIKHLEDKHKLDYDKSVDMPIEEYRLVDLNCLICDEKFTYFGYLVSHVNTNHPKNCLICDKCDQKFNKKRDLFSHMKNYHREGGYQCELCPQMFNSLNILRKHKINRHMTRCHICQLRLPSASLRQKHIELEHPDDGSLQCDACDKEFHTKQGLRMHARKCKGDLFELVKKEDYTMDLDLNYEDPAKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSQDFPDSDAMKEHTVLEHPVCNIKEKCIRKCRESVACVKIDVSTLTCKVCFESLSDLDNLLDHLIVKHNANYDKTITTCLQPYRLIKDNMACPNCPGEVFRFFGTLLKHMNKKHTNNNIICVYCGESFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKTHGVKAAKCPKCPETFATQYLRQKHLIDAHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSVCNMKFFNNVLLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMSRHNKHLDAIHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827241;
- 90% Identity
- -
- 80% Identity
- -