Aleu024176.1
Basic Information
- Insect
- Agriopis leucophaearia
- Gene Symbol
- -
- Assembly
- GCA_949125355.1
- Location
- OX421288.1:3604718-3610798[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.92 67 4.9 1.7 1 23 72 95 72 95 0.93 2 25 2 1.4e+02 3.8 0.0 2 23 121 143 120 143 0.92 3 25 0.0032 0.24 12.6 1.7 1 23 163 185 163 185 0.97 4 25 0.16 12 7.3 1.6 1 22 189 210 189 211 0.78 5 25 0.044 3.3 9.0 2.9 1 23 215 238 215 238 0.97 6 25 0.89 65 4.9 6.1 2 23 245 267 244 267 0.95 7 25 0.0019 0.14 13.3 0.3 1 23 274 297 274 297 0.95 8 25 0.0035 0.26 12.5 2.5 1 23 303 325 303 325 0.97 9 25 3.3e-05 0.0024 18.8 0.7 1 22 331 352 331 352 0.96 10 25 0.052 3.8 8.8 1.6 1 23 389 411 389 411 0.95 11 25 6.4 4.6e+02 2.2 0.0 5 23 442 461 441 461 0.91 12 25 0.012 0.85 10.9 0.2 2 23 482 504 481 504 0.95 13 25 0.008 0.59 11.4 2.7 2 23 510 532 509 532 0.94 14 25 0.00026 0.019 16.1 0.6 1 23 537 560 537 560 0.95 15 25 0.5 36 5.7 0.4 2 23 563 585 562 585 0.92 16 25 0.017 1.2 10.3 0.7 2 22 592 612 591 612 0.93 17 25 0.0045 0.33 12.2 0.5 1 23 670 693 670 693 0.92 18 25 0.99 73 4.8 0.1 3 23 722 743 720 743 0.91 19 25 0.057 4.2 8.7 0.2 3 23 767 789 766 789 0.95 20 25 0.00067 0.049 14.7 0.4 3 20 796 813 794 817 0.90 21 25 0.014 1.1 10.6 0.6 1 23 822 845 822 845 0.97 22 25 0.0033 0.24 12.6 0.3 2 23 851 873 851 873 0.92 23 25 5.5e-05 0.004 18.2 4.7 1 23 877 900 877 900 0.97 24 25 0.00024 0.017 16.2 0.6 2 23 907 928 906 928 0.96 25 25 0.0088 0.64 11.2 3.1 1 23 934 956 934 956 0.97
Sequence Information
- Coding Sequence
- atgttcttcAAAGACAGTCAACGAAAACTAGTACCAGAGAAGACCACTGAAAGATCATTTTCCTTTTTAGGTAACATACCGGGGAAAACATCATACGAGGCAGAGAATAAGTCCTCACTATCTGCCACGAAGAGAAACAGACTCATGAAGAAAAACGCTATAACGCTTCTAGAATGTTCCACTATTGTCCCTTTCAAGTGGCACAGACAAAACTACCTCTGTTTCTATTGTCATCTCACTCTGAAATCCATGGAGGAAGTGAAACAACACACCAAAGCAGAGCATATAAAACCAAACATAAAATCAGCTGTCTCTTTCTTGAGGCGAGATGAAAAGGTCAAAGTTGATGTGTCCTCCATCGAATGTAGACTTTGCGCGAATTCGATTATAAACCTAAACGGGCTGATCGAACATATGAAAACTGTTCATAACAGAGTTTTCAGCGAAGGCGAAAATGGCTTGATACCGTACAGGATTGGAAATACCTATCATTGTGCGATTTGCGACGAAACCTTTCAGTATTTCATCAAACTGAACCAACACATGAACGAACATTACGGTCATTATGTCTGCGAGTTATGTGGAAAATCATTTCTAAGCAGCGACAGGCTAAGATGCCATTCCTTAAGTCACGGCTCAAAATTTCACTGCAGCATTTGCTCTGAAATCTTCGACTCTCTAACCCAAAGAAACCACCATATTTCGACCATACACAACAAACCTAAACTCCTTAAATGCTACCACTGCTCTGAGGTTTTTACCACCTATAATAAACGCAAGCTACATCACAATAAAGTGCACAACATAGAAATACCAGAATACAAATGTCCAGTTTGCAGTAAAAGTTTTCAAATTTTAAGCAAAATGACGGTACATGTAAAAGAAGTTCACGTGAGAGAGAAGAATTTCTCTTGTAGCATGTGTGATAGTAGGTTTTTCTCTAAGACGCAAGTGCAGAAGCATATGGTGAGGCATGTAGGTGAGAAAACACATCAGTGTGACGTTTGCAAGAAAGCATATGCCAGGAAACAGACTTTGAAGGATCATATGCGTGTTAAAACGCGGAAATACAAGGGAACCGAGTCGTTATCTACGCGTAGAAGGAGAAACCTACAGATTATTTTCAACAACACCTCGATTATACCTTTTAAGTGGCGTGGGAAGTATCTGTGCTTCTATTGTAGCAAAGATGTATCGGAATATACGGAGTTGAGAAAACATACGAAACTTCACGGAGAATGCTCTATACTAGATCATTCTTTGAAGGCTTTAAAAGGTGGCACTAATATGGAGATCAAAATCGACGTTTCAGATCTTGCTTGCATATGCGGGGAACTATTCCCCTCTCTAGAAGAAATAATCAAACATCTAGAAGAGAAGCACAAGCTAGAATACGACAGAAACGTTGACATGGCCATAGAAGAATACAGACTTGTCGATTTAAATTGTCTAATTTGTGAAGAAAAGTTTTCTTATTTCGGGTATTTAGTCTCACACGTGAATACAAATCATCCTAAAAACTGCCTCATTTGCGATCAATGTAAccaaaagtttaataaaaaacgaGATCTGTTTTCGCACAAAAAGAACTACCATAGAGACGGAGGGTATCAATGTGAACTATGTCCTCAGGCTTTCAACTCTCTGAATATGCTTCGAAAGCATAGAATCAATAGGCACATGACTCGATGCCATATCTGTCAATTAAGGCTTCCCTCAGCAGCCTTGAGGCAGAAACATATAGACTTAGAACATCCCGACGACGGATCTCTTAAATGTGACGCGTGCGACAAAGAATTCCACACGAAACAAGGCCTCAGAATGCATGCGAGAAAATGCAAAGGAGACCTCATGCAACTGTCTATCAAGAAAGAAGACTACAACATGGATTTGGATTTGAACTACACGGATCCGTCGAAACGACCTAGCGTTAAGCAAATACGCGAAAATATAGTAATTGTCATCAACATGTCCACGGCTATACCGTTCAACTTTTACAAGAACAAGTTTAACTGTTTTTACTGTTCTAAAGACTTCCCCGATTCGGATTCTATGAAAGAACACACTGTTGTCGAACACCCCGTGTGTGACGTCAAAGAGAAATGCATCAAAAAATGTCGAGAGTCCGTGGCGTGTGTTAAAATTGACGTTTCAACGCTAGCCTGCAAGGTTTGCTTTGAAACCATGCCGAATTTGGACAATCTACTCGATCATCTGATTGCTAAACACGACGCCAATTACGACAAATCGATCATGACATGCTTGCAGCCTTACAGACTAATCAAAGACAACATGGCTTGTCCTAACTGCCCTGGGGAGGTGTTTCGCTTCTTTGGCACATTACTAAAACACATGAATAAAAATCATACGAACAACAATATTATTTGCGTTTATTGCGGCGAGACGTTTCGTCGCGACCAGAATTTACGCGTTCACATTTGGAGGCATCACCGGGATGGTCGTTTCAAATGCAACATTTGCGGCGCTGAATGTAACATACCCTCTCGTCTGTACATGCACATGGCGAAATCTCACGGTGTGAAAGCCGCGAAATGTCCGAAGTGCTCCGAAGCGTTCGCAACTCAATACCTTCGACAAAAACATTTGATAGACGTTCACAACTCTGGTCACAAATGTTCCTACTGCGGTAAACTCTTCACACGAAACTCCTTCATGCGCGATCATATCAGAAGGACTCACCTTAAAGAGAAGAATGTGGAATGCTCCGTCTGCAATATGAAGTTTTTTAACAATGTGCTGTTGAGAAGACATATGGTCAAGCATAGCGGAGAGAAGAATTTCCATTGTGAAGTGTGCGGTGAAAGATTTTTCTGGCGGAAAAGTTTGCGGACTCACATGTCGAGGCACACTAAGCATCTGGaccctataaatatataa
- Protein Sequence
- MFFKDSQRKLVPEKTTERSFSFLGNIPGKTSYEAENKSSLSATKRNRLMKKNAITLLECSTIVPFKWHRQNYLCFYCHLTLKSMEEVKQHTKAEHIKPNIKSAVSFLRRDEKVKVDVSSIECRLCANSIINLNGLIEHMKTVHNRVFSEGENGLIPYRIGNTYHCAICDETFQYFIKLNQHMNEHYGHYVCELCGKSFLSSDRLRCHSLSHGSKFHCSICSEIFDSLTQRNHHISTIHNKPKLLKCYHCSEVFTTYNKRKLHHNKVHNIEIPEYKCPVCSKSFQILSKMTVHVKEVHVREKNFSCSMCDSRFFSKTQVQKHMVRHVGEKTHQCDVCKKAYARKQTLKDHMRVKTRKYKGTESLSTRRRRNLQIIFNNTSIIPFKWRGKYLCFYCSKDVSEYTELRKHTKLHGECSILDHSLKALKGGTNMEIKIDVSDLACICGELFPSLEEIIKHLEEKHKLEYDRNVDMAIEEYRLVDLNCLICEEKFSYFGYLVSHVNTNHPKNCLICDQCNQKFNKKRDLFSHKKNYHRDGGYQCELCPQAFNSLNMLRKHRINRHMTRCHICQLRLPSAALRQKHIDLEHPDDGSLKCDACDKEFHTKQGLRMHARKCKGDLMQLSIKKEDYNMDLDLNYTDPSKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSDSMKEHTVVEHPVCDVKEKCIKKCRESVACVKIDVSTLACKVCFETMPNLDNLLDHLIAKHDANYDKSIMTCLQPYRLIKDNMACPNCPGEVFRFFGTLLKHMNKNHTNNNIICVYCGETFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKSHGVKAAKCPKCSEAFATQYLRQKHLIDVHNSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECSVCNMKFFNNVLLRRHMVKHSGEKNFHCEVCGERFFWRKSLRTHMSRHTKHLDPINI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827241;
- 90% Identity
- -
- 80% Identity
- -