Ecre039882.2
Basic Information
- Insect
- Ectropis crepuscularia
- Gene Symbol
- -
- Assembly
- GCA_963693475.1
- Location
- OY856362.1:10461716-10478538[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.45 64 5.8 2.5 1 23 231 254 231 254 0.94 2 23 0.0012 0.17 13.9 0.6 1 23 322 344 322 344 0.98 3 23 0.38 54 6.0 0.8 1 10 348 357 348 367 0.82 4 23 0.087 12 8.0 0.9 1 23 374 397 374 397 0.92 5 23 0.11 16 7.7 3.8 2 23 404 426 403 426 0.96 6 23 0.00081 0.12 14.4 0.3 1 23 433 456 433 456 0.95 7 23 0.0055 0.78 11.8 2.3 1 23 462 484 462 484 0.97 8 23 4e-06 0.00057 21.7 2.7 1 23 490 512 490 512 0.98 9 23 0.031 4.4 9.4 2.0 1 23 555 577 555 577 0.96 10 23 0.0037 0.52 12.3 0.2 2 23 648 670 647 670 0.95 11 23 0.00051 0.073 15.0 2.6 2 23 676 698 675 698 0.95 12 23 0.005 0.71 11.9 0.6 1 23 703 726 703 726 0.94 13 23 0.41 58 5.9 0.4 2 23 729 751 728 751 0.93 14 23 0.0017 0.24 13.4 0.6 2 22 758 778 757 778 0.93 15 23 0.0023 0.33 13.0 0.5 1 23 836 859 836 859 0.95 16 23 1.2 1.8e+02 4.4 0.1 3 23 888 909 886 909 0.92 17 23 0.065 9.2 8.4 0.2 3 23 933 955 932 955 0.95 18 23 0.00076 0.11 14.5 0.4 3 20 962 979 960 983 0.90 19 23 0.091 13 8.0 0.8 1 23 988 1011 988 1011 0.97 20 23 0.0015 0.22 13.5 0.1 2 23 1017 1039 1017 1039 0.92 21 23 0.00082 0.12 14.4 5.2 1 23 1043 1066 1043 1066 0.97 22 23 0.00048 0.068 15.1 0.6 2 23 1073 1094 1072 1094 0.96 23 23 0.01 1.5 10.9 3.1 1 23 1100 1122 1100 1122 0.97
Sequence Information
- Coding Sequence
- ATGAATTTCGACGAAATAGTGGTCAAGGAGAGCCCGGGGATATGCCGGTGTTGTCTCTCCGAGGGCTGCTACAAAGACTTGGGCTCAGAATATATTTGGATGAACGAAGCCGAAGTTTATGCCGATATGTTGCTGGATTGTTTCGACATTGGCATCACCCAGCACAGCGATGGGCCGAACGGGGCGAAGCGCCTCATCTGCGAGGTGTGCATCACACGGCTCCGAGACGCCTGCAACTTCAAGAAGCAGGTGGTGGACTCGGAGAAGCGGTTCATTGACATGCTCGGACGGGGAGAGTTCAAAACAAAAATGGTGTTATTCAAGCCTCCAATGGAGCTGAAGGTGGAATCCATAGAAGAACCTCCAGAAGATGTGATGGCCGAGGATGTTGAATATCTCGATGACATGGAGTACGAAGGAAATGACGACGACGTGAAGGTCGAAGGCATCCAGTCGACATCCAGGGCTACGACCTCCGAAGATCGTCCCCTCAAACGGGGCAGGCCCAAGAAGGACTCCACATCGACCAAGGCAAAGAGACAGAAGACTGTGAAAGGTGAGACAACCGAGGACGAGGCATTGAGTAAGTCCTCAATGACAGCCACAAAGAGAAACCGACTCATGAAGAAAAACGCTATAACGCTTCTAGAATGCTCCAATATCCTTCCCTTCAAATGGCACAGACAGAACTACCTCTGCTTCTATTGTCATCTCACTCTAAAAACGATAGATGAAGTGAAACAGCACACTAGAGAGAAACACGTAAAACCGAGCATAAAATCTGCTGTCTCGTTCTTAAGAAGAGACGAAAAGGTTAAAGTTAACGTTTCGGGAATAGAGTGTAGACTTTGTTCGCATGCCATTCTAGACCTTAACGATTTAATGGAACACCTCAAAGTCCATCACAATAGAACTTTCAACGAAGGCGAAAATGGTTTGATACCACACAAATTAGATAACAGCTTCCAATGCGCGGTTTGCGACGAAACGTTTCAGTATTTCATCAAACTGAACCAGCATATGAACGAGCATTTCGGACATTATATTTGCGAATTGTGCGGCAAATCGTTCCTTAGTAGCGATAGATTAAGGTGTCATTCTCTTTGTCACGGCTCGAAGTTTTCCTGTAGCATTTGTTCCGAAACATTCGACTCTTTGACACTGCGAAACAATCACTTCTCATCAGTCCACAATAAGCCGAAACTCCTCAAATGTCTGTACTGCACAGAAATCTTTACCAGTTACAGCAAACGAAAGCAACACCACAATAAAGCTCATGATGTAGCGATCCCAGAATACAAATGTCCGGTTTGCAACAAATCGTTtcaaattttgagcaaaatGACGGTACACGTGAAGGAAGTACACGTCAGAGAGAAGAATTTCTCTTGCAGTCTGTGCGATAGTAGGTTCTTTTCGAAGACCCAAGTTCAGAAGCATATGGTGCGACATGTCGGGGAGAAGACACATCAGTGTGAAGTATGTAAAAAGGCATACGCTAGGAAACAGACGTTGAGGGATCATATGCGGACACATAATGATGATAGGAATGGTAAAACGCGGAAATACAAAGGAAACGAGTCGTTATCGACGCGTAGAAGAAGGAATCTACAGGTTCTATTCAACAACACTACTATAATACCGTTTAAATGGCGCGGCAAGTATCTATGCTTCTACTGCAGCAAAGATGCTTCTGATTACGCAGAACTGAGGCACCATACGAAAATGCATGGCCAGTGTTCGATCTCAGACCATTCATTGAAAGCTTTGAAGGGTGGAACGAATATGGAGATCAAAATTGACGTTTCTAATCTAGCCTGCATTTGCGACGAAAAAATCCCATCTCTAAACGAAATCATCGATCATCTCGAAGAGAAACATAAGCTGGAATATGATAGGAACGTAGATATGGCTATAGAAGAATACAGGCTTGTTGATTTGAATTGCTTGATTTGTGATGAGAAGTTTTCTTACTTTGGATATCTAGTGTCACATGTCAACACGAGTCACCCGAAAAACTGCCTCATATGCGATAAATGTAACCAGAAATTCAATAAGAAGCGAGATCTGTTCTCACATATGAAAAACTACCACAGAGAGGGTGGGTATCAGTGTGAATATTGTCCTCAAGCTTTTAACTCACTAAATATACTTCGAAAGCATAGGATCAACAGACATATGACTCGATGCCATATATGTCAGCTGCGACTGCCTTCAGCTGCGTTACGGCAAAAGCATATAGAATTGGAACATCCAGACGACGGGTCCCTTCAATGTGATGTATGTGATAAAGAATTCCACACGAAGCAAGGCCTCAGAATGCACGCCCGAAAATGCAAAGGGGACTTGTTGCAAATATCTGTAAAGAAAGAAGATTACACTATGGACTTGGATTTAACCTACAAAGACCCGACGAAAGGACCCAGTGTCAAACAGATTCGCGAAAATATCGTCACAGTAATCAATATGTCAACAGCTATACCTTTCAACTTTAACAAAAACAGATTTAATTGTTTCTACTGCTCTAAAGACTTCCCTGATTCCGATTCTATGAAGGAACATACGATTGTCGAACATCCTGTCTGTGATGTCAAAGAAAagtgtattaaaaaatgtcGGGAATCCGTCGCTTGCGTCAAAATCGAcatttcaacgttagcttgtaAAGTTTGCTTCGAAAGTATGAGTAATCTGGACAATATGATCGATCATTTAGTCTCCAAACACGATGCCAATTACGATAAATCTATAACGACATGTCTGCAGCCCTATAGATTAATCAAAGACAATATGGCGTGTCCTAACTGTCCCGGAGAAGTGTTTCGTTTCTTTGGCACCTTACTCAAGCATATGAACAAAAACCATACGAATAATAATATCATTTGCGTATACTGTGGTGAAACATTTCGTCGCGATCAGAACTTACGCGTCCACATATGGAGACACCATCGTAACGGTCGTTTCAAATGCAGCATATGTGACGCCGATTGTAATATACCATCGCGTTTGTACATGCACATGGCGAAAACTCACGGTGTCAAAGCGGCTAAATGTCCCGAATGCCCTGAAGCATTTGCCACGCAATACCTGCGTCAGAAGCATCTCATAGACGCACACAATTCCGGCCACAAATGTTCGTTTTGCGATAAGCTTTTCACTCGAAATTCGTTTATGCGCGATCATATAAGAAGGACCCATCTCAAAGAGAAGAACGTTGAATGTTCCGTGTGTAACAtgaaattttttaataatattttgttgagACGGCATATGGTGAAACATAGCGGTGAGAAGAACTTCCATTGTGATGTGTGCGGGGAGAGATTCTTCTGGCGTAAAAGTTTGCGGACGCATATGTCGAGGCATAATAAACATTTGGATGCTATACATTTGTAA
- Protein Sequence
- MNFDEIVVKESPGICRCCLSEGCYKDLGSEYIWMNEAEVYADMLLDCFDIGITQHSDGPNGAKRLICEVCITRLRDACNFKKQVVDSEKRFIDMLGRGEFKTKMVLFKPPMELKVESIEEPPEDVMAEDVEYLDDMEYEGNDDDVKVEGIQSTSRATTSEDRPLKRGRPKKDSTSTKAKRQKTVKGETTEDEALSKSSMTATKRNRLMKKNAITLLECSNILPFKWHRQNYLCFYCHLTLKTIDEVKQHTREKHVKPSIKSAVSFLRRDEKVKVNVSGIECRLCSHAILDLNDLMEHLKVHHNRTFNEGENGLIPHKLDNSFQCAVCDETFQYFIKLNQHMNEHFGHYICELCGKSFLSSDRLRCHSLCHGSKFSCSICSETFDSLTLRNNHFSSVHNKPKLLKCLYCTEIFTSYSKRKQHHNKAHDVAIPEYKCPVCNKSFQILSKMTVHVKEVHVREKNFSCSLCDSRFFSKTQVQKHMVRHVGEKTHQCEVCKKAYARKQTLRDHMRTHNDDRNGKTRKYKGNESLSTRRRRNLQVLFNNTTIIPFKWRGKYLCFYCSKDASDYAELRHHTKMHGQCSISDHSLKALKGGTNMEIKIDVSNLACICDEKIPSLNEIIDHLEEKHKLEYDRNVDMAIEEYRLVDLNCLICDEKFSYFGYLVSHVNTSHPKNCLICDKCNQKFNKKRDLFSHMKNYHREGGYQCEYCPQAFNSLNILRKHRINRHMTRCHICQLRLPSAALRQKHIELEHPDDGSLQCDVCDKEFHTKQGLRMHARKCKGDLLQISVKKEDYTMDLDLTYKDPTKGPSVKQIRENIVTVINMSTAIPFNFNKNRFNCFYCSKDFPDSDSMKEHTIVEHPVCDVKEKCIKKCRESVACVKIDISTLACKVCFESMSNLDNMIDHLVSKHDANYDKSITTCLQPYRLIKDNMACPNCPGEVFRFFGTLLKHMNKNHTNNNIICVYCGETFRRDQNLRVHIWRHHRNGRFKCSICDADCNIPSRLYMHMAKTHGVKAAKCPECPEAFATQYLRQKHLIDAHNSGHKCSFCDKLFTRNSFMRDHIRRTHLKEKNVECSVCNMKFFNNILLRRHMVKHSGEKNFHCDVCGERFFWRKSLRTHMSRHNKHLDAIHL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00827241;
- 90% Identity
- -
- 80% Identity
- -