Hato011095.1
Basic Information
- Insect
- Hypomecis atomaria
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_964007245.1
- Location
- OZ023286.1:2576757-2588186[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-75 5.2e-71 240.6 24.1 1 297 19 302 19 305 0.90 2 2 1 4.2e+04 -5.5 13.7 208 270 300 360 279 379 0.50
Sequence Information
- Coding Sequence
- ATGCGAGGGCTCGATCTAGTTGCGCTCCTTTACATGCAAGTAGTTCATATAGAGGCAGAGCAGCGGTtggcggcgcggcgtgcggcGCGGGCGGAGGCGCGCGAGATCCGCATGCGCGAGCTGGAGCGGCAGCAGCGCGAGCAGGAGGACCATGCCGACAAGGCCTACGACATGTATGCAGAAACGGTGGGACGTCGCGGCGGCACGCGGCTGGCCGCGCTCAGCCCCGCGGCCGCGCTCACACACTCGCCGCGCCGGAGCTCCGAGGACTCCGCCGACGACACCTTTAATATTAAGGACTTAAGGCACGAAATGAAAGAGGTGGAAGAGAAGTTCCGCAAGGCGATGATATTGAACGCGCAGCTGGACAACGACAAGGCGGCGCTACACTACCAGCTGGAACTGCTCAAAGATAGAATCCTGGAGCTTCAGGAGGAATACGCGCAGTTACAGCGCGAGCACCGCGAGAAGTGCTCGGCGCACGAGCGGCTGCGGCGCGAGCACGCGTCCACGGAGCGCGAGCTGGGGCGCGCGCGGGACGCCGTGCGCGCGCGGGAcgcggccgccgccgccgccgggtTCGTGTTCGCGGAGGCCGCGGCCGGCGCCACGCACGCCGAGGGCTTCGGCGCCGTGCCGCCGCTCGCGCTGCTCTCGCACGACCAGGAGCGCGCGCTCGCCGACACCGGCGACGGCACGCTCGACGTGCGGTTGCAGAAGCTAGTGAGCGCGAAGACAGCCCTGGAGTCGGAGGTCCGCAAGCTGAAGCTCACGCTGAACGAGGAGCGCGCCGCGCGACAGAACGGCGTCTCCAACCACCACGACGCCGACTACGAGAACGAATTGGAGACGCTCCGCAAGTGCGTGTCGGAGGCGAaggggcgggcggcgcgcgccgaGGCCGAGGCCGCGCTGCAGGCGGCCGGCGTCGCGCGCCTCGAGGCGCAGCTGCAGCGGCTGCGCGCGCGCCAGGACGCTACCGACGACCGCGAGGAGCAGCTCAAGCAGGAGCGCCGCAAGCTGCAGCGGGAGGCGCGAGAGGCTCTCAACCGGGTGGAGGAGTTGGAGACGGAGAACAGCCACCTCACCAAGCGACTCGACAAGCTAAAGAACGCCAAATCCGCGCTGCTCAAGGAGCTGTGA
- Protein Sequence
- MRGLDLVALLYMQVVHIEAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGGTRLAALSPAAALTHSPRRSSEDSADDTFNIKDLRHEMKEVEEKFRKAMILNAQLDNDKAALHYQLELLKDRILELQEEYAQLQREHREKCSAHERLRREHASTERELGRARDAVRARDAAAAAAGFVFAEAAAGATHAEGFGAVPPLALLSHDQERALADTGDGTLDVRLQKLVSAKTALESEVRKLKLTLNEERAARQNGVSNHHDADYENELETLRKCVSEAKGRAARAEAEAALQAAGVARLEAQLQRLRARQDATDDREEQLKQERRKLQREAREALNRVEELETENSHLTKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00055438;
- 90% Identity
- iTF_00826985;
- 80% Identity
- -