Basic Information

Insect: Hypolimnas misippus
Gene Symbol: -
Assembly: GCA_008963455.1
Location: JBBEEQ010000006.1:3167669-3174020[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.82 72 4.9 0.1 3 23 115 135 113 135 0.96

2 18 0.26 23 6.5 0.0 2 23 139 161 138 161 0.95

3 18 0.059 5.2 8.5 0.6 2 23 402 424 401 424 0.96

4 18 0.049 4.3 8.7 0.1 1 20 432 451 432 453 0.95

5 18 0.0029 0.26 12.6 1.0 2 23 463 484 462 484 0.94

6 18 1 90 4.6 0.4 1 23 500 523 500 523 0.85

7 18 0.13 12 7.4 1.7 1 23 532 555 532 555 0.92

8 18 0.21 19 6.7 0.3 3 23 634 655 632 655 0.90

9 18 4.8 4.2e+02 2.5 0.7 1 23 660 683 660 683 0.88

10 18 5.6e-05 0.0049 18.0 1.8 1 23 689 711 689 711 0.96

11 18 2.4e-06 0.00021 22.3 0.8 1 23 718 740 718 740 0.98

12 18 9.4e-05 0.0083 17.3 2.3 1 23 745 767 745 767 0.96

13 18 0.00071 0.062 14.5 1.8 1 23 773 795 773 795 0.99

14 18 1.9e-06 0.00017 22.6 1.4 1 23 801 823 801 823 0.98

15 18 0.00049 0.043 15.0 3.3 2 23 830 851 830 851 0.97

16 18 0.00065 0.057 14.7 0.4 2 23 859 881 858 881 0.97

17 18 0.00066 0.058 14.6 0.9 1 23 886 908 886 908 0.98

18 18 0.24 21 6.6 4.0 1 23 914 937 914 937 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.82	72	4.9	0.1	3	23	115	135	113	135	0.96
2	18	0.26	23	6.5	0.0	2	23	139	161	138	161	0.95
3	18	0.059	5.2	8.5	0.6	2	23	402	424	401	424	0.96
4	18	0.049	4.3	8.7	0.1	1	20	432	451	432	453	0.95
5	18	0.0029	0.26	12.6	1.0	2	23	463	484	462	484	0.94
6	18	1	90	4.6	0.4	1	23	500	523	500	523	0.85
7	18	0.13	12	7.4	1.7	1	23	532	555	532	555	0.92
8	18	0.21	19	6.7	0.3	3	23	634	655	632	655	0.90
9	18	4.8	4.2e+02	2.5	0.7	1	23	660	683	660	683	0.88
10	18	5.6e-05	0.0049	18.0	1.8	1	23	689	711	689	711	0.96
11	18	2.4e-06	0.00021	22.3	0.8	1	23	718	740	718	740	0.98
12	18	9.4e-05	0.0083	17.3	2.3	1	23	745	767	745	767	0.96
13	18	0.00071	0.062	14.5	1.8	1	23	773	795	773	795	0.99
14	18	1.9e-06	0.00017	22.6	1.4	1	23	801	823	801	823	0.98
15	18	0.00049	0.043	15.0	3.3	2	23	830	851	830	851	0.97
16	18	0.00065	0.057	14.7	0.4	2	23	859	881	858	881	0.97
17	18	0.00066	0.058	14.6	0.9	1	23	886	908	886	908	0.98
18	18	0.24	21	6.6	4.0	1	23	914	937	914	937	0.97

Sequence Information

Coding Sequence: ATGGCCTCTGATGAATCGGACGATGAACCTCTTTCCGTTTTGGCGGCAGCTAAGAAGACCAATGCTGAAAGTTTGGACGAGCAATACTCTGAAAGTAACGATGACGAAcctaagaaaaagaaaaagaaagatcCACCTTTTAAAAAACTTGgtgttactataaaaataaaaaaattaactaccgTTGTTCCGCCGGTAGTTATCGCTAGACCTTTGGATGTATGGCTCTATTTAAAGGACTTAAATCCGACAGGCCCTTACAGTTGTCTACTATGCACAGATTGGTTCATAAATAGGTCTAAAATGATAATGCACTATGCTTTGAatcataaaaaagatttttgtggTATATGCAGatactTTGTACCTGACAGAGAGGCTTGGTGGAATCATCAAAAATTTCACACCCCGTGGCCATGTTCTCAATGTGTCGGGACCTTTCCATCAGAATTGGCATTACGACAACACCTCAATAGTGTGCACAACCTAGTCCATTGCCGTTTGTGTCACTTTAGAGTCACTGCTGATGATCACTACAATTCCCATCTATTCCAAAAGCATAGTGTAACAAATGTATCATCTAAGAATGAAGAACTACTTTGGGAACTTGATTTTGAAGGAGCtgacaaatttttatgcttactTTGCTCAAAACCTGACAATTCAGTGTCCAACTTCTTCGGGCATTATATGGGCTTCCATCATTTCACTTTAAAATGCTTGACCACTATTGTGGCTGGAAAAGACACACCCTTCCTGGTAAACGGTGCCGAAGTCAGTGATCGATTTATTAATGAACAACTAAAAGGACATGTGAGGCTTGGCTATGTTGACTTGCAGCCAAAGAGTTTTGAAAGTAAACCAATAATTGACTCTGTTACCGAAGAACCTAGCAATGAAGATAGAGGTTTAACTGAAACAGAGTTACCAGAAATTAAACAAGAGAATGCTAGTGATACTGAGGATCAAAAGCAAGAAAGAGACAATGAAATGAGTGAAAAAGATGAACAAAGTCAAAATGATGAAACAATAGATTATAAGGGTGAAGAAGATTTTGATATTACAATGACAGAGTTAATTGtacttgaaaaatgttattttaattacgtcAGTCAGACTCTTGTAGATCTAGATTCAAAGATAATGCCTGAAGCTTCTCATATAGATTATGAGAAAATTAAATCTGATACAATAATAGATGTGGAATGTTCTCTGTGTAAAACAAAGCTCGAAACAACAATGTCTCTAACTATGCATATGAATAAAATCCACAGTATTAAAACAGTACCTCTATTTTCTTGTAGAGTTTGTGCTACAACATTTGATACTTATGGTGAACTGGCAAGTCATATAACAGAagaattgattgattttgacgATCTCTGGATATGTCAGTTTTGTAATAAAGAATTTAGTAATAGAGAAGAAACAAGGAAACATCTGACGGAACATTGGAATGCGTTAGATTACGATAACTGTTTCAGCCCACATTTAGGTTTCAAATGCAAGTATTGTCCAACATTATTTTGGAATGAACCAGACAGAGAAACACATCAGATAAgagtacatttcaataaatataaagaacagTTTTATAAATGTGACCCATGTTCAAAGACATTCGGTGATAAGGTTTGGTTTATTCATCACTTCTTAGAAAAGCACTTTGAAAAGGAAGCCCCAACAAGTTTGTTTTTGCTCAAGTGCTGTTTATGCTGCAATGTATTACCAGGTGTCGATGAAATGAGAAGTCATTTTGCAGAAACTCATCCCGAACTTAGGAAATTGTATTGTTCGCTGGATGCTTGCTTATATAAACCTCTGAGCCATCGTAAATCATTTAAACTACATGTTAAGatgATTCACGGCCCATCATCTAAATCAGATAAGCCAGTGAATTGCAATATATGTCAGCGTGAGTTCGCCAGTGCACGTGCATGCGCTACACATATGGCTCAAGTGCATGGCCCTGGCAAGTTTAAATGCAAACTCTGCAGAGAAGTATTACAGACTATAGATGAGAGAAAACTTCACTATCTACTTCGTCATCCTGGCCGTCATCCATTTGAGTGCTCTGAATGTGGCAAATCTTTCCAATATAAGTCATCACTATATATGCATAAACAGGACCACATGCCTAATAAACAAAACTATACATGTAGCTATTGTGGAAAAGTGTTTGCAaaaaaAGATTCATATCGAGAGCACGTCCAGATCCACGAGGGCCCACGGCACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGTTGCGCCACGAGCGCCGCCACACCGGCGAGCGCCCCTACCGCTGCGCGCACTGCCCCAGAGCCTTCGCCGACAAGGGCGCCTGTACCGCGCACACCAGGACTCACTCTAGAGATACTTCATATGCTTGTTTATACTGCGGCCAGACATTTGTCCAGAAATCCAAACTCACATATCATATCAGGAAACACACAGGCGAAAATCTGGAGTCATGTACAGTCTGTTCAAAGTTGTTCACAAGTGCATGTTCCTTACGAGAACACATGAAAACACATATTGAAAAGAGACAAATAGTCAAATGTCCTCTCTGCgATAAGGGCTACCAGGACGAGCGGTACATGTTGCGTCACCTGCGCACGTCGCACACGCGCTCGCAGTTCTCGTGTCCGATCTGTCACAAGCTGCTCACTAGCGCCGCCGGTCTGCGCCATCACGTGATCACGCACAGCCCGCTCAATACATTCCGGTGTAAATGTTGCCCTAAATCATATGCAGTCAAGAGGACTATAGTGAAGCATTTGCGAAAACGTCACGGTTTAAAGGgtacagaaataaatataaaagactaTTTCACCAGATTAGAACCTAGTGAGTGCCAATTGAATCTAGATGAAGAGACTTTAAACAGTATATTTGGACCCCCTAAGAAGAAAGTGCCGGATATATTAATTGGAGACTTTGTCACATTCTCCAAAAAGTTATCATTTGCTCAGAATGCAGTGGAGAGTAAAGAGTCAGAGGAAGATTCGGAGGACGATGTGGAGAACGAAACCAAAGAGAGTGAGAAGGAAAGTGATGTAGAAGAAAAACCacagataacaataaaaaaagaagttcCAAGTGAAACACCAGATGAGTTGGAACCTACAGACTTTGTCAGTGTTAAAATTGAACCATTGGATGATGAAAACATGCAATAA
Protein Sequence: MASDESDDEPLSVLAAAKKTNAESLDEQYSESNDDEPKKKKKKDPPFKKLGVTIKIKKLTTVVPPVVIARPLDVWLYLKDLNPTGPYSCLLCTDWFINRSKMIMHYALNHKKDFCGICRYFVPDREAWWNHQKFHTPWPCSQCVGTFPSELALRQHLNSVHNLVHCRLCHFRVTADDHYNSHLFQKHSVTNVSSKNEELLWELDFEGADKFLCLLCSKPDNSVSNFFGHYMGFHHFTLKCLTTIVAGKDTPFLVNGAEVSDRFINEQLKGHVRLGYVDLQPKSFESKPIIDSVTEEPSNEDRGLTETELPEIKQENASDTEDQKQERDNEMSEKDEQSQNDETIDYKGEEDFDITMTELIVLEKCYFNYVSQTLVDLDSKIMPEASHIDYEKIKSDTIIDVECSLCKTKLETTMSLTMHMNKIHSIKTVPLFSCRVCATTFDTYGELASHITEELIDFDDLWICQFCNKEFSNREETRKHLTEHWNALDYDNCFSPHLGFKCKYCPTLFWNEPDRETHQIRVHFNKYKEQFYKCDPCSKTFGDKVWFIHHFLEKHFEKEAPTSLFLLKCCLCCNVLPGVDEMRSHFAETHPELRKLYCSLDACLYKPLSHRKSFKLHVKMIHGPSSKSDKPVNCNICQREFASARACATHMAQVHGPGKFKCKLCREVLQTIDERKLHYLLRHPGRHPFECSECGKSFQYKSSLYMHKQDHMPNKQNYTCSYCGKVFAKKDSYREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYRCAHCPRAFADKGACTAHTRTHSRDTSYACLYCGQTFVQKSKLTYHIRKHTGENLESCTVCSKLFTSACSLREHMKTHIEKRQIVKCPLCDKGYQDERYMLRHLRTSHTRSQFSCPICHKLLTSAAGLRHHVITHSPLNTFRCKCCPKSYAVKRTIVKHLRKRHGLKGTEINIKDYFTRLEPSECQLNLDEETLNSIFGPPKKKVPDILIGDFVTFSKKLSFAQNAVESKESEEDSEDDVENETKESEKESDVEEKPQITIKKEVPSETPDELEPTDFVSVKIEPLDDENMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01078483; iTF_01080165; iTF_01508294; iTF_01079306; iTF_01507468; iTF_01506588; iTF_01080959; iTF_00796747; iTF_00843756; iTF_00985398;
90% Identity: iTF_00843756;
80% Identity: -