Basic Information

Insect: Nymphalis urticae
Gene Symbol: -
Assembly: GCA_905147175.1
Location: LR989993.1:10572765-10579368[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 3.5 3.3e+02 2.7 0.2 3 23 115 135 113 135 0.94

2 18 0.00065 0.06 14.4 0.1 2 23 139 161 138 161 0.96

3 18 0.034 3.1 9.0 0.4 2 23 401 423 400 423 0.96

4 18 0.035 3.2 9.0 0.4 1 20 431 450 431 452 0.95

5 18 0.013 1.2 10.3 0.2 2 23 462 483 461 483 0.94

6 18 0.87 80 4.6 0.4 1 23 499 522 499 522 0.85

7 18 0.076 7.1 7.9 2.0 1 23 531 554 531 554 0.92

8 18 2.2 2e+02 3.3 0.4 3 22 633 652 631 654 0.79

9 18 3.6 3.3e+02 2.7 1.0 1 23 659 682 659 682 0.89

10 18 4.8e-05 0.0044 18.0 1.8 1 23 688 710 688 710 0.96

11 18 2.1e-06 0.00019 22.3 0.8 1 23 717 739 717 739 0.98

12 18 8e-05 0.0074 17.3 2.3 1 23 744 766 744 766 0.96

13 18 0.0006 0.056 14.5 1.8 1 23 772 794 772 794 0.99

14 18 1.6e-06 0.00015 22.6 1.4 1 23 800 822 800 822 0.98

15 18 0.00042 0.039 15.0 3.3 2 23 829 850 829 850 0.97

16 18 0.00055 0.051 14.7 0.4 2 23 858 880 857 880 0.97

17 18 0.00056 0.052 14.6 0.9 1 23 885 907 885 907 0.98

18 18 0.12 11 7.3 4.1 1 23 913 936 913 936 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	3.5	3.3e+02	2.7	0.2	3	23	115	135	113	135	0.94
2	18	0.00065	0.06	14.4	0.1	2	23	139	161	138	161	0.96
3	18	0.034	3.1	9.0	0.4	2	23	401	423	400	423	0.96
4	18	0.035	3.2	9.0	0.4	1	20	431	450	431	452	0.95
5	18	0.013	1.2	10.3	0.2	2	23	462	483	461	483	0.94
6	18	0.87	80	4.6	0.4	1	23	499	522	499	522	0.85
7	18	0.076	7.1	7.9	2.0	1	23	531	554	531	554	0.92
8	18	2.2	2e+02	3.3	0.4	3	22	633	652	631	654	0.79
9	18	3.6	3.3e+02	2.7	1.0	1	23	659	682	659	682	0.89
10	18	4.8e-05	0.0044	18.0	1.8	1	23	688	710	688	710	0.96
11	18	2.1e-06	0.00019	22.3	0.8	1	23	717	739	717	739	0.98
12	18	8e-05	0.0074	17.3	2.3	1	23	744	766	744	766	0.96
13	18	0.0006	0.056	14.5	1.8	1	23	772	794	772	794	0.99
14	18	1.6e-06	0.00015	22.6	1.4	1	23	800	822	800	822	0.98
15	18	0.00042	0.039	15.0	3.3	2	23	829	850	829	850	0.97
16	18	0.00055	0.051	14.7	0.4	2	23	858	880	857	880	0.97
17	18	0.00056	0.052	14.6	0.9	1	23	885	907	885	907	0.98
18	18	0.12	11	7.3	4.1	1	23	913	936	913	936	0.97

Sequence Information

Coding Sequence: ATGGCCTCTGACGAGTCGGACGATGAACCTCTCTCCGTTTTGGCGGCGGCTAAAAAGTCAAATCCAGAAAGTTTTGAAGAACAATATTCTGAAGGCAGCGATGAAGAACCTAAAAAAAAGAAAAAGAAAGATACCCCTTATAAAAAATTAGGTGTGACCATAAAAATTAAAAAAATAAATACGGTCATTCCACCAGCAGTAATCGCTAGACCTTTGGATGTATGGCTCTACCTCAAAGACTTAAATCCAACAGGCCCTTATAGCTGCTTGCTATGCTCGGATTGGTTTATAAATAGATCTAAAATGATTATGCATTATTCTTTAAATCACAAAAAGGATTTTTGTGGAATTTGCAGATACTTTGTACCAGACAGAGAGACTTGGTGGAATCATGAGAAGTTTCACACTCCATGGCCATGTTCTCAATGTGTTGAGACATTCCCGACTGAAGTTCTTTTACGCAAGCACCTTAACACTGTGCACAATCTAGTCCATTGCCGTTTGTGTCACTTCAGAGTAACTGCTGATGATCACTACAATTCACACTTATTCCAGAAACATAATGTAACAAATATATCTTCCAAGAATGAGGAGCTACTCTGGGAACTTGACTATGAGGGAGCTGATAAATTTCTATGTTTACTTTGTTCTAAATCTGATAATTCAGTATCAAACTTTTTTGGACATTATATGGGCTACCATCATTTCACTCTTAAATGTTTGACGACAATTGTTGCTGGAAAGGACACACCATTCTCAGTAAATGGAGCTGAAGTCAGCGACCGTTTCATTGATGAACAGCTTAAAGGACATGTGAGGCTTGGCTATGTCGATTTGGAACCAAAGAATTTTTTTAAAAATCCAATAGTTGAATCCTTTGCGGAAGAACCCTGTAATGAAAGTAAAAGTTCAACAGCTGTTTTACCAGAAATCAAACAAGAGAGTGTTAGTGATACAGAGGACCCGAAGATAGAAAGGGACAATGAAATGAGTGAAAAAGATGAACAAAGTCAAAATGATGAAATAATAGATTATAAGGGTGATGAAGATTTTGACATCACATTGACAGAATTAATAGTATTAGAGAAATGTTATTTTAACTATATCAAGAAGACTCTTGTTGATATTAATTCAAACCAAATGCCCGAAACATCTCATATAGATTATGACAAAGCTAAATCAGATATTATTATGGATGTGGAATGCTCTCTATGTAAAACAAAACTTGAAACAGCACTAACCTTAACTACACACATGAATAAAATACACAGTATTAAAACAGTGCCTGTATTTTCTTGTAGAGTTTGTGCGACAACATTTGATACTCATAATGAACTGTCGAATCATATAACAGAAGAATTGGCCGATTTTGATGATTTATGGATATGTCAATTCTGTGATAAAGAATTTGATAACCGAGAGGCAACAAGGGCGCATTTAACAGAGCACTGGAATGCCTTAGATTATGATAATTGTTTCAGCCCACATTTAGGTTTTAAATGCAAATATTGTCCCACTTTATTTTGGAACGAACCAGACAGAGAAACACATCAGATAAGAGTACATTTTAATAAATATAAAGAACAGTTTTACAAGTGCGAAAGTTGTTCACAAACATTTGGTGATAAGGTTTGGTATATACATCATTTTTTAGAAAAACACTTTGAGCAGGAAGCCCCCACTAGTTCGTATTTGCTCAAGTGCTGTTTATGCTGCATTGTACTGTCCGGTGTTGACGAAATGAGAGGTCACTTTGAAGAGACACACCCTGAACTTAGGAAATTGTATTGTTCACTTGATTCTTGCATGTATAAGCCTCTAAGTCATCGCAAGTCTTTCAAATTACATGTTAAGATGATCCACGGCCCATCGTCCAGATCGGATAAACCAGTCAATTGTAATATCTGTCAAAGAGAATTTGGCAGCGCCCGTGCCTGCGGTACACATATGGCTCAAGTGCATGGTCCTGGAAAATTCAAATGCAAACTGTGCAGAGAAGTGCTTCAGACTATGGATGAAAGAAAACTGCATTATCTACTTCGTCATCCGGGTCGCCATCCGTTCGAGTGCTCTGAATGCGGCAAATCATTCCAGTACAAGTCATCTTTGTACATGCACAAACAGGATCACATGCCTAACAAACAGAACTACACGTGTAGCTACTGTGGGAAAGTGTTCGCGAAAAAGGACTCGTACCGCGAGCACGTTCAGATCCACGAAGGTCCGCGCCACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTGCGCCACGAGCGGCGCCACACGGGCGAGCGCCCCTACCGCTGCGCGCACTGCCCGCGGGCCTTCGCCGACAAGGGCGCCTGCACGGCGCACACCAGAACACATTCAAGAGACACATCGTATGCATGTTTATATTGTGGGCAGACGTTCGTACAGAAGTCTAAACTCACGTATCATATTCGGAAACACACTGGAGAAAATCTGGAATCATGTACGGTCTGCTCAAAGCTATTTACAAGTGCATGTTCGTTAAGAGAACATATGAAAACACACATTGAGAAGAGGCAAATCGTCAAATGTCCTCTTTGTGATAAAGGCTATCAGGATGAGCGCTACATGTTACGTCACCTGCGCACGTCGCACACGCGCTCGCAGTTCTCGTGCCCGATCTGCCACAAGCTGCTGACGAGCGCCGCCGGCTTGCGCCATCACGTCATCACGCACAGCCCACTTAACACATTCCGATGCAAATGTTGTCCTAAATCCTATGCGGTCAAGAGAACCATCATCAAGCACTTGCGAAAACGTCACGGCTTAAAGGGTACAGAAATCAATATAAAAGATTATTTCACCCGATTAGAACCTAGAGAGTGTAAATTGAACCTGGACGAATCAACTATGAACAGCATATTCGGACCACCTAAGAAGAAAGTACCAGATATATTGATTGGAGATTTTGTTACATTCTCTAAGAAGTTGACGTTTGCCCAAAATGCAGCAAGTAAAGAGTCTGATGACGATTCAGAAGATGAAGAAGAAAACAACGATACTAAAGACAGTGGGCCGACAGACAAGGAAAGCGATAATGATGAAAAACCAGAGATAACTGTAATAAAGCAGGAAGCTCCAACAGTAGAAGAAGAATTAGAACCAACGGACTTTGTCAGCGTTAAAATTGAACCAATGGATGAGGAACCCGCTGAATAG
Protein Sequence: MASDESDDEPLSVLAAAKKSNPESFEEQYSEGSDEEPKKKKKKDTPYKKLGVTIKIKKINTVIPPAVIARPLDVWLYLKDLNPTGPYSCLLCSDWFINRSKMIMHYSLNHKKDFCGICRYFVPDRETWWNHEKFHTPWPCSQCVETFPTEVLLRKHLNTVHNLVHCRLCHFRVTADDHYNSHLFQKHNVTNISSKNEELLWELDYEGADKFLCLLCSKSDNSVSNFFGHYMGYHHFTLKCLTTIVAGKDTPFSVNGAEVSDRFIDEQLKGHVRLGYVDLEPKNFFKNPIVESFAEEPCNESKSSTAVLPEIKQESVSDTEDPKIERDNEMSEKDEQSQNDEIIDYKGDEDFDITLTELIVLEKCYFNYIKKTLVDINSNQMPETSHIDYDKAKSDIIMDVECSLCKTKLETALTLTTHMNKIHSIKTVPVFSCRVCATTFDTHNELSNHITEELADFDDLWICQFCDKEFDNREATRAHLTEHWNALDYDNCFSPHLGFKCKYCPTLFWNEPDRETHQIRVHFNKYKEQFYKCESCSQTFGDKVWYIHHFLEKHFEQEAPTSSYLLKCCLCCIVLSGVDEMRGHFEETHPELRKLYCSLDSCMYKPLSHRKSFKLHVKMIHGPSSRSDKPVNCNICQREFGSARACGTHMAQVHGPGKFKCKLCREVLQTMDERKLHYLLRHPGRHPFECSECGKSFQYKSSLYMHKQDHMPNKQNYTCSYCGKVFAKKDSYREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYRCAHCPRAFADKGACTAHTRTHSRDTSYACLYCGQTFVQKSKLTYHIRKHTGENLESCTVCSKLFTSACSLREHMKTHIEKRQIVKCPLCDKGYQDERYMLRHLRTSHTRSQFSCPICHKLLTSAAGLRHHVITHSPLNTFRCKCCPKSYAVKRTIIKHLRKRHGLKGTEINIKDYFTRLEPRECKLNLDESTMNSIFGPPKKKVPDILIGDFVTFSKKLTFAQNAASKESDDDSEDEEENNDTKDSGPTDKESDNDEKPEITVIKQEAPTVEEELEPTDFVSVKIEPMDEEPAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00824996;
90% Identity: iTF_01507468;
80% Identity: -