Basic Information

Insect: Vanessa cardui
Gene Symbol: -
Assembly: GCA_905220365.1
Location: LR999936.1:2914726-2926305[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 2.5 2.1e+02 3.2 0.5 1 23 86 109 86 109 0.93

2 19 3.6 3.1e+02 2.7 0.2 3 23 114 134 112 134 0.94

3 19 0.00049 0.042 14.8 0.1 2 23 138 160 137 160 0.96

4 19 0.035 2.9 9.0 0.4 2 23 400 422 399 422 0.96

5 19 0.013 1.1 10.4 0.4 1 20 430 449 430 451 0.95

6 19 0.021 1.8 9.7 0.2 2 23 461 482 460 482 0.93

7 19 0.89 75 4.6 0.4 1 23 498 521 498 521 0.85

8 19 0.026 2.2 9.4 1.8 1 23 530 553 530 553 0.94

9 19 3.8 3.2e+02 2.6 0.3 3 22 632 651 630 653 0.79

10 19 1.6 1.4e+02 3.8 0.9 1 23 658 681 658 681 0.92

11 19 4.9e-05 0.0041 18.0 1.8 1 23 687 709 687 709 0.96

12 19 2.1e-06 0.00018 22.3 0.8 1 23 716 738 716 738 0.98

13 19 8.2e-05 0.007 17.3 2.3 1 23 743 765 743 765 0.96

14 19 0.00062 0.052 14.5 1.8 1 23 771 793 771 793 0.99

15 19 1.7e-06 0.00014 22.6 1.4 1 23 799 821 799 821 0.98

16 19 0.00043 0.036 15.0 3.3 2 23 828 849 828 849 0.97

17 19 0.00057 0.048 14.7 0.4 2 23 857 879 856 879 0.97

18 19 0.00057 0.049 14.6 0.9 1 23 884 906 884 906 0.98

19 19 0.21 18 6.6 4.0 1 23 912 935 912 935 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	2.5	2.1e+02	3.2	0.5	1	23	86	109	86	109	0.93
2	19	3.6	3.1e+02	2.7	0.2	3	23	114	134	112	134	0.94
3	19	0.00049	0.042	14.8	0.1	2	23	138	160	137	160	0.96
4	19	0.035	2.9	9.0	0.4	2	23	400	422	399	422	0.96
5	19	0.013	1.1	10.4	0.4	1	20	430	449	430	451	0.95
6	19	0.021	1.8	9.7	0.2	2	23	461	482	460	482	0.93
7	19	0.89	75	4.6	0.4	1	23	498	521	498	521	0.85
8	19	0.026	2.2	9.4	1.8	1	23	530	553	530	553	0.94
9	19	3.8	3.2e+02	2.6	0.3	3	22	632	651	630	653	0.79
10	19	1.6	1.4e+02	3.8	0.9	1	23	658	681	658	681	0.92
11	19	4.9e-05	0.0041	18.0	1.8	1	23	687	709	687	709	0.96
12	19	2.1e-06	0.00018	22.3	0.8	1	23	716	738	716	738	0.98
13	19	8.2e-05	0.007	17.3	2.3	1	23	743	765	743	765	0.96
14	19	0.00062	0.052	14.5	1.8	1	23	771	793	771	793	0.99
15	19	1.7e-06	0.00014	22.6	1.4	1	23	799	821	799	821	0.98
16	19	0.00043	0.036	15.0	3.3	2	23	828	849	828	849	0.97
17	19	0.00057	0.048	14.7	0.4	2	23	857	879	856	879	0.97
18	19	0.00057	0.049	14.6	0.9	1	23	884	906	884	906	0.98
19	19	0.21	18	6.6	4.0	1	23	912	935	912	935	0.97

Sequence Information

Coding Sequence: ATGGCCTCTGACGAGTCGGACGATGAACCTCTTTCTGTTTTGGCGGCGGCTAAGAAGACGAATCCTGAAAAATTTGAAGAAAATTCTGAAAGTAGTGATGGCGAACCTAAGAAAAAGAAAAAGAAGGATCCACCTTATAAAAAATTAGGTGTTACCATAAAAATTAAAAAAATAAACACCGTTATTCCACCAGTAGTCATTGCTAGACCTCTGGATGTATGGCTATACCTAAAAGATTTAAATCCGACTGGCCCTTACAGCTGTCTGTTATGCTCAGAATGGTTTATAAATAGATCTAAAATGATCATGCATTATTCCTTGAATCACAAAAAGGATTTTTGTGGAATTTGCAGATATTTTGTACCGGACAGAGAGACTTGGTGGAATCATGAGAAGTTTCACACCCCATGGCCATGTTCTCAGTGTGTTGAGACATTCCCAACTGAAGTTTTACTACGCAAGCATCTTAAAACTGTGCACAATCTAGTCCATTGTCGCTTGTGTCACTTTAGAGTCACTGCCGATGATCACTACAATTCACACTTATTCCAGAAACACAGTGTTACAAATGTATCATCAAAGAATGAAGAACTTCTCTGGGAACTTGACCACGAAGGAGCTGATAAATTCCTATGTTTACTTTGTTCTAAATCCGATAATTCAGTATCAAACTTCTTCGGACATTATATGGGCTACCATCACTTCACACTTAAATGTTTGACAACAATTGTAGCTGGAAAAGACACACCATTCTTGGTTAATGGAGCGGAAGTCAGTGACCGTTTTATAGATGAACAACTAAAAGGACATGTGAGGCTTGGTTATGTCGATTTACAGCCAAAGAATTTTGACACAAAACCAATAGTTGAATCCTATGCAGAAGAACCCTATAATGAAAGTAAAAGTTCAATAGTTGTTTTACCGGAAGTGAAACAAGAGAATGTTAGTGATACAGAGGACCAGAAGCCAGAAAGAGACAATGAAATGAGTGAAAAAGATGAACAGAGTCAAAATGATGAAATTATTGACTATAAGGGGGACGAGGATTTCGATATCACATTGACAGAATTGATAGTATTAGAAAAATGTTATTTTAATTATATTAAGCAGACACTTATTGATATAAATTCTAACCAAATGCCCCAAAATTCTAATATAGACTATGAAAAAGCTAAATCTGATATTATTATGGATGTGGAATGCTCTCTATGCAAAACAAAATTGGAAACGGCACTGACATTGACTACGCACATGAATAAAATACACAGTATTAAAACGGTGCCTGTCTTTTCTTGTAGAGTGTGTGCAACAACATTTGACACTCATAATGAACTGACAAATCATATAACAGAAGAATTGGCTGATTTTGAGGATTTATGGATATGTCAATTCTGTGATAAGGAGTTTGATAACAGAGAGGCAACGAGGGTACATTTGACAGAACACTGGAATTCCCTAGATTATGATAATTGTTTCAGCCCACACTTAGGTTTCAAATGCAAGTATTGTCCTACTTTATTTTGGAATGAACCAGACAGAGAAACGCATCAGATAAGAGTACACTTTAATAAATATAAAGAACAGTTTTACAAGTGTGAAAGTTGTTCACAAACATTTGGTGATAAGGTTTGGTACATACATCATTACTTAGAAAAACACTTTGAGCAGGGAGCTCCAACCAATTTGTATTTGCTCAAGTGTTGTTTATGCTGCATTGTGCTGTCTGGTGTCGATGAAATGAGAAGTCACTTTGAAGAGACTCACCCTGAACTCAGGAAATTGTATTGTTCACTGGATTCTTGCATGTACAAGCCACTTAGTCATCGGAAGTCATTCAAATTACATGTTAAGATGATCCACGGTCCATCAGCTAGATCAGACAAGCCAGTCATTTGCAACGTGTGTCAAAGAGAATTCGGCAGCGCTCGTGCGTGCGGTACACATATGGCTCAAGTGCACGGACCTGGTAAATTCAAATGCAAACTGTGCAGGGAAGTGCTACAGACTTTAGACGAAAGGAAACTCCACTATCTCCTCCGTCACCCCGGTCGGCATCCGTTCGAGTGTTCGGAGTGCGGGAAATCCTTCCAGTACAAGTCGTCGCTCTACATGCACAAACAAGACCACCTGCCCAACAAGCAGAACTACACGTGCAGCTACTGTGGCAAAGTGTTTGCGAAGAAGGACTCGTACCGCGAGCACGTGCAGATCCACGAGGGTCCGCGGCACGCGTGCTCGTACTGCCCCATGCGCTTCGTGCAGCGCTCCAACATGCTGCGGCACGAGCGCCGGCACACGGGCGAGCGGCCCTACCGCTGCGCGCACTGCCCGCGCGCCTTCGCCGACAAGGGCGCCTGCACCGCGCACACCAGAACACACTCAAGAGACACGTCATATGCGTGTTTATACTGTGGACAGACATTCGTCCAGAAGTCTAAACTCACATATCATATTCGGAAACACACCGGAGAAAATCTGGAGTCGTGTACAGTCTGCTCCAAGCTGTTCACAAGTGCGTGTTCCTTAAGAGAGCACATGAAAACACACATTGAGAAGAGGCAAATCGTCAAATGTCCGCTTTGTGACAAAGGGTACCAGGACGAGCGCTACATGCTGCGTCACCTTCGCACGTCGCACACTCGCTCGCAGTTCTCGTGCCCCATCTGCCACAAGTTGCTCACCAGCGCCGCCGGCCTGAGGCACCACGTCATCACGCACAGCCCGCTGAACACGTTCCGATGCAAATGTTGTCCTAAATCCTATGCGGTGAAGAGGACCATCGTCAAGCATCTGAGAAAACGACACGGATTAAAAGGAACGGAAATTAATATAAAAGATTATTTCACCCGATTAGAACCTAGAGAGTGCAAATTGAATCTGGACGAATCAACTATGAACAGCATATTTGGACCACCTAAGAAGAAAATGTCAGATATATTGATAGGAGATTTCGTTACATTCTCGAAGAAGTTGTCGTTTGCCCAAAATGCAGCGGGTAAAGAGTCCGATGATGATTCTGAGGACGAGGAGGAAAACAATGATACCAAAGATGGTGTGCTGACGGACAAGGAAAGCGAAAATGATGAAAAACCAGAGGTACCGGTAATAAAGCAGGAAGTTCCATCTGCAGAAGAGGAATTAGAACCTACAGACTTTGTCAGCGTTAAGATAGAACCACTAGATGATGAACACATAGAATAA
Protein Sequence: MASDESDDEPLSVLAAAKKTNPEKFEENSESSDGEPKKKKKKDPPYKKLGVTIKIKKINTVIPPVVIARPLDVWLYLKDLNPTGPYSCLLCSEWFINRSKMIMHYSLNHKKDFCGICRYFVPDRETWWNHEKFHTPWPCSQCVETFPTEVLLRKHLKTVHNLVHCRLCHFRVTADDHYNSHLFQKHSVTNVSSKNEELLWELDHEGADKFLCLLCSKSDNSVSNFFGHYMGYHHFTLKCLTTIVAGKDTPFLVNGAEVSDRFIDEQLKGHVRLGYVDLQPKNFDTKPIVESYAEEPYNESKSSIVVLPEVKQENVSDTEDQKPERDNEMSEKDEQSQNDEIIDYKGDEDFDITLTELIVLEKCYFNYIKQTLIDINSNQMPQNSNIDYEKAKSDIIMDVECSLCKTKLETALTLTTHMNKIHSIKTVPVFSCRVCATTFDTHNELTNHITEELADFEDLWICQFCDKEFDNREATRVHLTEHWNSLDYDNCFSPHLGFKCKYCPTLFWNEPDRETHQIRVHFNKYKEQFYKCESCSQTFGDKVWYIHHYLEKHFEQGAPTNLYLLKCCLCCIVLSGVDEMRSHFEETHPELRKLYCSLDSCMYKPLSHRKSFKLHVKMIHGPSARSDKPVICNVCQREFGSARACGTHMAQVHGPGKFKCKLCREVLQTLDERKLHYLLRHPGRHPFECSECGKSFQYKSSLYMHKQDHLPNKQNYTCSYCGKVFAKKDSYREHVQIHEGPRHACSYCPMRFVQRSNMLRHERRHTGERPYRCAHCPRAFADKGACTAHTRTHSRDTSYACLYCGQTFVQKSKLTYHIRKHTGENLESCTVCSKLFTSACSLREHMKTHIEKRQIVKCPLCDKGYQDERYMLRHLRTSHTRSQFSCPICHKLLTSAAGLRHHVITHSPLNTFRCKCCPKSYAVKRTIVKHLRKRHGLKGTEINIKDYFTRLEPRECKLNLDESTMNSIFGPPKKKMSDILIGDFVTFSKKLSFAQNAAGKESDDDSEDEEENNDTKDGVLTDKESENDEKPEVPVIKQEVPSAEEELEPTDFVSVKIEPLDDEHIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00824996;
90% Identity: iTF_01080165; iTF_01078483; iTF_01506588; iTF_01508294; iTF_01080959; iTF_01079306;
80% Identity: -