Basic Information

Insect: Hypolimnas misippus
Gene Symbol: Ssrp
Assembly: GCA_008963455.1
Location: JBBEEQ010000006.1:4324610-4333463[+]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.4e-23 4.6e-20 72.6 3.3 1 69 550 616 550 616 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.4e-23	4.6e-20	72.6	3.3	1	69	550	616	550	616	0.99

Sequence Information

Coding Sequence: ATGGAATTCCTAGAATATAACGATGTAACTGCAGAGATTAAGGGTACTATGgtACCTGGGAGATTGAAAATGACCGATCAAAACATAATATTCAAAAACAGTAAAACTGGTAAAGTGGAGCAAATATCAGCCAATGATATTGATCTTGTCAATTTTCAAAAGTTCATTGGATCATGGGGTTTGAGAGTGTTTTTGAAAAATGGTACTCTGCACAGATATGGCGGTTTCAAGGATGgggAACAAGAGAAAGTAGCAAAGTTCTTTAAGAGCAACTATCATAAAGATATGCTGGAAAAGGAACTTTCACTCAAAGGATGGAACTGGGGAACGGCTAAGTTTAATGGCGCTGTACTTAGCTTCAATGTTGGTACCAACACTGCTTTTGAGATACCCTTGCACTATGTGTCACAGTGCAATACTGGCAAGAATGAAGTCACACTTGAGTTTCATCagaatgacGATACACCAGTCTCATTAATGGAGATGAGGTTCCACATTCCAACCAACGAGCTGGCGGGCGACATGGACGCGGTGGAGGCCTTCCATCAGCAGGTCATGAACAAAGCGAGCGTCATCTCCGTCTCCGGAGACGCTATTGCTATCTTTAGGGAATTACAGTGTCTTACTCCTCGTGGTCGCTACGACATCAAGGTGTTCCAAACATTTTTCCAACTTCACGGTAAAACATTCGACTACAAGATCCCAATGTCAACAGTTCTACGACTATTCTTGCTGCCACACAAAGACACACGGCAAATGTTTTTCGTAGTTTCATTGGATCCTCCCATAAAACAAGGTCAAACTAGGTACCACTACTTAGTTCTACTATTTGGTATTGAAGAAGAAACCAGCCTGGAGCTGCCTTTTACTGAAGAAGAATTAAAAGAGAAGTATGAGGGAAAAATTACAAAGGAATTATCTGGACCAACATATGAAGTGCTTGCTAAAATAATGAAAGTCATTATCAACAGAAGGGTTACAGGACCTGGAGATTTCTTAGgGCACCACAAGACGCCGGCCATCGCGTGCTCGTACAAGGCGGCGGCGGGCTACCTGTACCCGCTGGAGAAGGGCTTCATCTACGTGCACAAGCCGCCCGTGCACATCCGCTTCGAGGAGATCGCCTCCGTCAACTTCGCGCGCGGCGGCGCCTCCTCCACCAAATCTTTCGACTTCGAAATAGAACTGAAATCTGGCAGCGTTCACACATTTAGCAGTATAGAAAAAGGGGAATACGACAAATTGTTCGATTACATAACATCTAAGAAGCTTCATGTCAAGAACACTGGAAAGAATGACAAAGCGCTGTACGACGACGACTTCGGTGACTCGGACACTGAGAAGGAGCCGGACGCGTACCTCGAGCGCGTGAAGGCCGAGGCCAAGGAGCGCGACTCCAACGACAGCGACGGCTCCGACGAGAGCACTGACGAGGACTTCAACCCCGACAAGGCCAAGGAGAGCGACGTGGCCGAGGAATACGACACCAATCCATCATCTTCCGAAGATTCCGATGCTTCAGGTGCATCTGGTGATAGtaagaaagaaaagaagaagGAGAAGAAACCTAAAAAGACTATCACTATTTCGGAGGCGCCGCGCAAGCGCAAGGAGAAGTCCAAGAAGCGCGAGAAGGACGCGAACGCGCCCAAGCGGCCCGCCACCGCCTTCATGCTGTGGCTCAACGAGAACCGCAAGGGCATCGTGGAAGACAACCCCGGCATCAAGGTCACCGAGATCGCCAAGAAGGGCGGCGAGCTGTGGCGCGACCTCAAGGACAAGTCGGAATGGGAAGAAAAGGCCAACAAATCAAAGGAAGAATACAATCAAGCGATGAAGAAATACAAAGAAAGTGGAGCAGCAGATGAGTTTAAACAAAAGAAGAAGCAAGCTGAGAAGGAACGTAAAGCCGCAGACAAGAAGGCTAAAGCTCCAGCGAGTAAAAAGGCAAAGGCTACCAGCGCCGGCCCCAGCTCCGCGAAGTTCACCAGCAAGGAGTACATTGAAGACGACGACAGCTCCTCCGACTCGGACAATGACAAGAAGAATAAGAAGGATAGCAAAGATACTAAAGAATCAAAGAAAGAGAAGCCAAAAGCTAAGAATTCATCGTCAGAGGCCGCGTCATCGGGCTCCGATGCGAGCGGAAGCGGGAGCGGGAGCgattaa
Protein Sequence: MEFLEYNDVTAEIKGTMVPGRLKMTDQNIIFKNSKTGKVEQISANDIDLVNFQKFIGSWGLRVFLKNGTLHRYGGFKDGEQEKVAKFFKSNYHKDMLEKELSLKGWNWGTAKFNGAVLSFNVGTNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIPTNELAGDMDAVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRGRYDIKVFQTFFQLHGKTFDYKIPMSTVLRLFLLPHKDTRQMFFVVSLDPPIKQGQTRYHYLVLLFGIEEETSLELPFTEEELKEKYEGKITKELSGPTYEVLAKIMKVIINRRVTGPGDFLGHHKTPAIACSYKAAAGYLYPLEKGFIYVHKPPVHIRFEEIASVNFARGGASSTKSFDFEIELKSGSVHTFSSIEKGEYDKLFDYITSKKLHVKNTGKNDKALYDDDFGDSDTEKEPDAYLERVKAEAKERDSNDSDGSDESTDEDFNPDKAKESDVAEEYDTNPSSSEDSDASGASGDSKKEKKKEKKPKKTITISEAPRKRKEKSKKREKDANAPKRPATAFMLWLNENRKGIVEDNPGIKVTEIAKKGGELWRDLKDKSEWEEKANKSKEEYNQAMKKYKESGAADEFKQKKKQAEKERKAADKKAKAPASKKAKATSAGPSSAKFTSKEYIEDDDSSSDSDNDKKNKKDSKDTKESKKEKPKAKNSSSEAASSGSDASGSGSGSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00318849; iTF_00752065; iTF_01496577; iTF_01503873; iTF_00077474; iTF_00261858; iTF_00008003; iTF_00035651; iTF_00736611; iTF_00779492; iTF_01080708; iTF_00642309; iTF_01158949; iTF_01336837; iTF_00212454; iTF_00457222; iTF_00621222; iTF_01282278; iTF_00178151; iTF_00836555; iTF_00835588; iTF_01090766; iTF_00859463; iTF_01490119; iTF_00112488; iTF_01507208; iTF_00197353; iTF_01245929; iTF_00157195; iTF_00208875; iTF_00876161; iTF_00022787; iTF_00874453; iTF_00875298; iTF_01152153; iTF_00711007; iTF_00710193; iTF_00236619; iTF_00235849; iTF_00256907; iTF_00638635; iTF_00663073; iTF_01170593; iTF_00119589; iTF_00468165; iTF_00909703; iTF_01171463; iTF_00467402; iTF_00856619; iTF_00377100; iTF_00632748; iTF_00811023; iTF_00361617; iTF_01219763; iTF_01161367; iTF_01335928; iTF_00686335; iTF_00737472; iTF_00698308; iTF_00705005; iTF_00696466; iTF_00706009; iTF_00699162; iTF_00701060; iTF_00321586; iTF_00700115; iTF_01528283; iTF_00697340; iTF_00701980; iTF_01509597; iTF_01079051; iTF_01149579; iTF_01334891; iTF_00146417; iTF_01564645; iTF_00775242; iTF_00777994; iTF_00774478; iTF_00458040; iTF_00114938; iTF_00683354; iTF_00681642; iTF_00682421; iTF_00689388; iTF_00323504; iTF_00761671; iTF_01251731; iTF_01079884; iTF_00076525; iTF_01142381; iTF_01453261; iTF_01451445; iTF_01220646; iTF_00647983; iTF_00842671; iTF_00925711; iTF_00345808; iTF_01155184; iTF_01156442; iTF_01546640; iTF_01544873; iTF_01545739; iTF_01542957; iTF_01543926; iTF_00780241; iTF_00823889; iTF_01437041; iTF_01415835; iTF_00781011; iTF_00827955; iTF_01041747; iTF_01402707; iTF_01078196; iTF_00791189; iTF_00844341; iTF_01561998; iTF_00357495; iTF_00358554; iTF_01341270; iTF_01561110; iTF_00364919; iTF_00971361; iTF_00840290; iTF_00408454; iTF_00072807; iTF_00353065; iTF_00858538; iTF_01115690; iTF_01176170; iTF_01429930; iTF_00011979; iTF_00635403; iTF_00634476; iTF_00785997; iTF_00206062; iTF_01010350; iTF_00801839; iTF_01209264; iTF_00968019; iTF_00783476; iTF_00819158; iTF_01208182; iTF_00013015; iTF_00180471; iTF_00673495; iTF_00354074; iTF_01017722; iTF_00249691; iTF_00640315; iTF_01302331; iTF_00970396; iTF_01443837; iTF_00341310; iTF_00720286; iTF_01359743; iTF_00063584; iTF_00896800; iTF_00913600; iTF_01082432; iTF_01166689; iTF_01360609; iTF_00651746; iTF_00932546; iTF_01502082; iTF_00033797; iTF_00825730; iTF_00926597; iTF_00032902; iTF_00206984; iTF_00935720; iTF_00044494; iTF_00650000; iTF_00826960; iTF_00790257; iTF_00143059; iTF_01172371; iTF_00895933; iTF_00666526; iTF_00649088; iTF_00318085; iTF_01071621; iTF_01401285; iTF_00994343; iTF_00674283; iTF_01569325; iTF_00055410; iTF_00027744; iTF_00000327; iTF_00074503; iTF_01073607; iTF_00621991; iTF_00049897; iTF_01342211; iTF_00834633; iTF_01075433; iTF_00677611; iTF_00290700; iTF_00441484; iTF_01140908; iTF_00150541; iTF_00706957; iTF_00723949; iTF_01180301; iTF_01487693; iTF_00636398; iTF_00001168; iTF_00637648; iTF_00637647; iTF_00820081; iTF_01125457; iTF_01124584; iTF_01197714; iTF_01361618; iTF_01363104; iTF_01436082; iTF_00187155; iTF_00187154; iTF_00250452; iTF_01173268; iTF_00282389; iTF_00281325; iTF_00185303; iTF_00869623; iTF_01202455; iTF_00923672; iTF_01016664; iTF_00186170; iTF_00823034; iTF_00837530; iTF_01179482; iTF_00878843; iTF_01491931; iTF_00787645; iTF_01221565; iTF_00125118; iTF_00818336; iTF_01260096; iTF_01138935; iTF_00204344; iTF_01508056; iTF_00781817; iTF_00275258; iTF_00658394; iTF_00654278; iTF_00656137; iTF_00660303; iTF_00411453; iTF_00418977; iTF_00959393; iTF_00461553; iTF_01034579; iTF_00960153; iTF_01033725; iTF_00021315; iTF_00784387; iTF_00843525; iTF_00794598; iTF_00908840; iTF_00404917; iTF_00421353; iTF_01463244; iTF_00205114; iTF_01193581; iTF_00075534; iTF_01502969; iTF_00723054; iTF_01279246; iTF_00342191; iTF_00382607; iTF_00159828; iTF_00412500; iTF_00871284; iTF_00409274; iTF_01181880; iTF_00960921; iTF_01367897; iTF_01280285; iTF_01332702; iTF_00973777; iTF_00450105; iTF_00148448; iTF_00410275; iTF_00289607; iTF_00772871; iTF_00149388; iTF_00462383; iTF_00680534; iTF_01133719; iTF_00777370; iTF_01141658; iTF_01072486; iTF_01312218; iTF_01494299; iTF_00213436; iTF_01153020; iTF_00277350; iTF_00288040; iTF_00922866; iTF_01495036; iTF_01495767; iTF_00430653; iTF_01206541; iTF_01204879; iTF_01205692; iTF_01203229; iTF_01204029; iTF_01140189; iTF_01506333; iTF_00786782; iTF_01403422; iTF_00327072; iTF_01151200;
90% Identity: iTF_00843525;
80% Identity: -