Basic Information

Insect: Glyphodes pyloalis
Gene Symbol: Ssrp
Assembly: GCA_037074685.1
Location: JAYKKO010000005.1:5665176-5674100[+]

Transcription Factor Domain

TF Family: HMG
Domain: HMG_box domain
PFAM: PF00505
TF Group: Other Alpha-Helix Group
Description: High mobility group (HMG) box domains are involved in binding DNA, and may be involved in protein-protein interactions as well. The structure of the HMG-box domain consists of three helices in an irregular array. HMG-box domains are found in one or more copies in HMG-box proteins, which form a large, diverse family involved in the regulation of DNA-dependent processes such as transcription, replication, and strand repair, all of which require the bending and unwinding of chromatin. Many of these proteins are regulators of gene expression. HMG-box proteins are found in a variety of eukaryotic organisms, and can be broadly divided into two groups, based on sequence-dependent and sequence-independent DNA recognition; the former usually contain one HMG-box motif, while the latter can contain multiple HMG-box motifs. HMG-box domains can be found in single or multiple copies in the following protein classes: HMG1 and HMG2 non-histone components of chromatin; SRY (sex determining region Y protein) involved in differential gonadogenesis; the SOX family of transcription factors [1]; sequence-specific LEF1 (lymphoid enhancer binding factor 1) and TCF-1 (T-cell factor 1) involved in regulation of organogenesis and thymocyte differentiation [2]; structure-specific recognition protein SSRP involved in transcription and replication; MTF1 mitochondrial transcription factor; nucleolar transcription factors UBF 1/2 (upstream binding factor) involved in transcription by RNA polymerase I; Abf2 yeast ARS-binding factor [3]; yeast transcription factors lxr1, Rox1, Nhp6b and Spp41; mating type proteins (MAT) involved in the sexual reproduction of fungi [4]; and the YABBY plant-specific transcription factors.
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 5.7e-23 6.3e-20 72.3 4.2 1 69 550 616 550 616 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	5.7e-23	6.3e-20	72.3	4.2	1	69	550	616	550	616	0.99

Sequence Information

Coding Sequence: ATGGAGTTTCTCGAATACAACGATGTACAGGCTGAAATCAAAGGAACTATGGTTCCAGGGAGGCTGAAGATGACTGATCAGAATATAGTATTCAAAAACAGCAAAACTGGAAAGGTGGAGCAGATATCTGCCAACGACATCGAGCTAGTAAACTTTCAGAAGTTCATCGGTTCCTGGGGCCTGCGTGTCTTCATGAAAAACGGAACGCTTCACAGATACGGCGGGTTTAAAGAAGGAGAACAAGAGAAGGTGGCCAAATTCTTCAAGTCCAACTATAATAAAGACATGCTAGAGAAGGAATTGTCCCTCAAGGGGTGGAACTGGGGTACGGCCAAGTTCAACGGAGCAGTTCTCAGCTTCAATGTTGGCTCTAACACTGCATTTGAGATACCTCTACATTACGTGTCACAGTGCAACACAGGAAAGAATGAAGTCACTCTTGAATTCCATCagAATGATGATACACCGGTCTCCCTAATGGAGATGAGGTTTCACATACCGGCGAGTGAGCTGGCAGGCGACACGGACACGGTTGAGGCTTTCCATCAGCAGGTCATGAACAAAGCCAGCGTCATCTCAGTGTCTGGCGACGCCATCGCCATTTTCAGGGAGCTGCAGTGCCTTACACCTCGTGGTCGCTATGACATCAAGGTGTTCCAGACGTTCTTCCAGCTGCACGGTAAAACATTCGACTACAAGATACCAATGTCAACAGTCCTTCGACTATTCTTACTCCCCCACAAAGACACCCGGCAGATGTTCTTCGTGGTATCGCTGGACCCGCCCATCAAACAGGGTCAAACGCGGTACCACTACCTGGTCCTACTGTTCGGAATTGAAGAGGAGACTAGTTTGGAGTTGCCTTTTACAGAGGAAGAACTGAAAGAAAAATATGAAGGTAAAATAACCAAAGAACTGTCAGGGCCTACTTATGAAGTACTGGCAAAGATCATGAAGGTTATCATCAACAGAAGAGTCACAGGTCCAGGAGATTTCTTAGGGCACCACAAGACGCCGGCGATCGCTTGCTCGTACAAGGCGGCGGCCGGGTACCTGTACCCGCTGGAGAAGGGCTTCATATACGTGCACAAGCCGCCCGTGCACATCCGTTTCGAGGAGATCGCATCCGTCAACTTCGCTAGAGGCGGTGCCTCATCCACCAAATCGTTCGATTTCGAGATTGAGCTAAAACAAGGAAGTATTCACACATTCAGCAGTATAGAAAAGGGTGAATACGACAAGCTGTTTGACTACATCACGTCCAAGAAACTGCATGTCAAGAACACTGGAAAGAATGACAAGGCGTTGTACGACGACGACTTCGGCGACTCGGACACGGAGAAGGAGCCGGACGCGTACCTGGAGCGCGTGAAGGCGGAGGCCAAGGAGCGCGACTCGGACGACAGCGACGGCTCCGACGAGAGCACCGACGAGGACTTCAACCCGGACAAGGCCAAGGAGAGCGACGTCGCCGAGGAGTATGACACGAATCCGTCGTCGTCTGAAGACTCGGATGCGTCTGGAGCATCCAACGACAGCAAGAAAGAGAAGAAAAAGGAAAAGAAACCAAAGAAAACTATTACCATTTCCGAAGCGCCGCGTAAACGGAAAGAGAAGTCGAAGAAGCGCGAGAAAGACGCGAACGCGCCCAAGCGGCCGGCGACCGCGTTCATGCTGTGGCTCAACGAGAACAGGAAGAAGATCATCGAGGACAACCCCGGGCTCAAGGTCACCGAGGTCGCCAAGAAGGGCGGCGAGCTGTGGCGAGACCTCAAGGATAAGTCGGAATGGGAGGAGAAGGCCAGCAAAGCGAAAGAGGATTACAACCAGGCGATGAAGAAGTACAAAGACAGCGGCGCCGCTGACGAGTTCAAGCAGAAAAAGAAGCAAGCTGAAAAAGAGCGCAAGGCAAGTTTTACTTTATACGTATAA
Protein Sequence: MEFLEYNDVQAEIKGTMVPGRLKMTDQNIVFKNSKTGKVEQISANDIELVNFQKFIGSWGLRVFMKNGTLHRYGGFKEGEQEKVAKFFKSNYNKDMLEKELSLKGWNWGTAKFNGAVLSFNVGSNTAFEIPLHYVSQCNTGKNEVTLEFHQNDDTPVSLMEMRFHIPASELAGDTDTVEAFHQQVMNKASVISVSGDAIAIFRELQCLTPRGRYDIKVFQTFFQLHGKTFDYKIPMSTVLRLFLLPHKDTRQMFFVVSLDPPIKQGQTRYHYLVLLFGIEEETSLELPFTEEELKEKYEGKITKELSGPTYEVLAKIMKVIINRRVTGPGDFLGHHKTPAIACSYKAAAGYLYPLEKGFIYVHKPPVHIRFEEIASVNFARGGASSTKSFDFEIELKQGSIHTFSSIEKGEYDKLFDYITSKKLHVKNTGKNDKALYDDDFGDSDTEKEPDAYLERVKAEAKERDSDDSDGSDESTDEDFNPDKAKESDVAEEYDTNPSSSEDSDASGASNDSKKEKKKEKKPKKTITISEAPRKRKEKSKKREKDANAPKRPATAFMLWLNENRKKIIEDNPGLKVTEVAKKGGELWRDLKDKSEWEEKASKAKEDYNQAMKKYKDSGAADEFKQKKKQAEKERKASFTLYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00824735;
90% Identity: iTF_00318849; iTF_00432193; iTF_00953505; iTF_01026177; iTF_00042625; iTF_01118305; iTF_01338753; iTF_00425378; iTF_00907042; iTF_01031138; iTF_01246978; iTF_00043491; iTF_00374115; iTF_00447139; iTF_00907875; iTF_00906148; iTF_01084260; iTF_00071429; iTF_00924677; iTF_00952711; iTF_00041768; iTF_01192712; iTF_01533928; iTF_00040809; iTF_00111658; iTF_00123370; iTF_01062794; iTF_01532010; iTF_01063755; iTF_01340107; iTF_00449100; iTF_00810060; iTF_00809133; iTF_01029261; iTF_00375214; iTF_01085230; iTF_00850735; iTF_01030224; iTF_00037809; iTF_00973777; iTF_00300210; iTF_00301170; iTF_00711858; iTF_00726354; iTF_00831219; iTF_00758164; iTF_00851796; iTF_00951828; iTF_01230580; iTF_00072149; iTF_00364021; iTF_00274422; iTF_01527222; iTF_00122391; iTF_00302103; iTF_00445175; iTF_00685431; iTF_01117207; iTF_00120504; iTF_00928697; iTF_01027321; iTF_00446138; iTF_01377466; iTF_00273596; iTF_00147453; iTF_00667485; iTF_00745693; iTF_01061885; iTF_00121438; iTF_01441086; iTF_01526014; iTF_01028287; iTF_01119328; iTF_00784387; iTF_01317285; iTF_01316344; iTF_00171750; iTF_00018157; iTF_00017330; iTF_00931399; iTF_00932546; iTF_00112488; iTF_00677611; iTF_00290700; iTF_00281325; iTF_00709229; iTF_01487693; iTF_00038766; iTF_00036718; iTF_00114094; iTF_01361618; iTF_01533043; iTF_00783476; iTF_00282389; iTF_00869623; iTF_01152153; iTF_00186170; iTF_00185303; iTF_01221565; iTF_00177118; iTF_01332702; iTF_00113312; iTF_01260096; iTF_01363104; iTF_01264609; iTF_01503873; iTF_00261858; iTF_01425058; iTF_01064659; iTF_01285534; iTF_00237573; iTF_01094913; iTF_01093092; iTF_00124263; iTF_00622825; iTF_01094033; iTF_00172949; iTF_01439929; iTF_01073607; iTF_00621991; iTF_00785997; iTF_00785198; iTF_00001168; iTF_00000327; iTF_00345808; iTF_01173268; iTF_01538740; iTF_01179482; iTF_01491931; iTF_00383646; iTF_00736611; iTF_00008003; iTF_00642309; iTF_01017722; iTF_01018556; iTF_01071621; iTF_01158949; iTF_01153974; iTF_01564645; iTF_00164358; iTF_00277350; iTF_00695590; iTF_00715782; iTF_01220646; iTF_01282278; iTF_00761671; iTF_01437041; iTF_01415835; iTF_00994343; iTF_00674283; iTF_01490119; iTF_00935720; iTF_00985096; iTF_00986088; iTF_00353065; iTF_00834633; iTF_00408454; iTF_00364919; iTF_00960921; iTF_00837530; iTF_01245929; iTF_01544873; iTF_01545739; iTF_01542957; iTF_01546640; iTF_01543926; iTF_00467402; iTF_00468165; iTF_00011979; iTF_00236619; iTF_00235849; iTF_00256907; iTF_00836555; iTF_00835588; iTF_00407579; iTF_00406744; iTF_01443837; iTF_00076525; iTF_01453261; iTF_01451445; iTF_01452311; iTF_00075534; iTF_01337742; iTF_01279246; iTF_01561998; iTF_00357495; iTF_00358554; iTF_00647983; iTF_00771919; iTF_00801839; iTF_00925711; iTF_01204879; iTF_01217487; iTF_00323504; iTF_00650000; iTF_00146417; iTF_00790257; iTF_00791189; iTF_01076498; iTF_00187155; iTF_00187154; iTF_00744627; iTF_00934753; iTF_00933745; iTF_01178555; iTF_01248124; iTF_00827955; iTF_00968019; iTF_01041747; iTF_01172371; iTF_00250452; iTF_00284532; iTF_00035651; iTF_00382607; iTF_00819158; iTF_01341270; iTF_01561110; iTF_00013015; iTF_01202455; iTF_00433144; iTF_01437976; iTF_01438921; iTF_01438922; iTF_00795696; iTF_00403801; iTF_01367897; iTF_00205114; iTF_00275258; iTF_00077474; iTF_00806722; iTF_01336837; iTF_01401285; iTF_00178151; iTF_00150541; iTF_01090766; iTF_00844341; iTF_00026843; iTF_00356190; iTF_01403422; iTF_00027744; iTF_00354074; iTF_00390362; iTF_00683354; iTF_00878843; iTF_01083323; iTF_01416776; iTF_01251731; iTF_01302331; iTF_00072807; iTF_00640315; iTF_00832997; iTF_00720286; iTF_00970396; iTF_00971361; iTF_00887391; iTF_00288040; iTF_00673495; iTF_01153020; iTF_01359743; iTF_01205692; iTF_01206541; iTF_01204029; iTF_00430653; iTF_01140189; iTF_01203229; iTF_01280285; iTF_00786782; iTF_00711007; iTF_00710193; iTF_00649088; iTF_00913600; iTF_01082432; iTF_01151200;
80% Identity: -